Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E08
         (343 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.0  
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)                 27   5.3  
SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)            26   7.0  

>SB_46818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 127 LLIQIKEYVKKSLSFLPSLLGIKLLDL 207
           LL  I+E  K  L+ LPSL+ +K LDL
Sbjct: 219 LLAWIQEKRKNGLAILPSLIRMKALDL 245


>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
          Length = 1555

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 197  CWICHTFNEASQTLASARNPLSNFXXRSVRGVTT 298
            CW     +  S+  A + NP++ F  R +R V T
Sbjct: 1166 CWDISKLSHGSEGAAMSINPMAEFTRRRLRRVPT 1199


>SB_49009| Best HMM Match : Ribosomal_S26e (HMM E-Value=7.3)
          Length = 163

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 177 KPLRNKIAGFATHLMRRLRHSQVR 248
           K LR ++  FA+H  RRLR + +R
Sbjct: 56  KALRGRVGLFASHCERRLRRTALR 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,429,944
Number of Sequences: 59808
Number of extensions: 159416
Number of successful extensions: 341
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)