Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E08
         (343 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M22142-1|AAA28869.1|  131|Drosophila melanogaster protein ( D.me...    84   5e-17
BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p pro...    84   5e-17
AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal pr...    84   5e-17
AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB...    84   5e-17

>M22142-1|AAA28869.1|  131|Drosophila melanogaster protein (
           D.melanogaster ribosomalprotein S17 gene, complete cds.
           ).
          Length = 131

 Score = 83.8 bits (198), Expect = 5e-17
 Identities = 38/44 (86%), Positives = 40/44 (90%)
 Frame = +3

Query: 123 LTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGI 254
           L F TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGI
Sbjct: 26  LDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGI 69



 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 35/90 (38%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +1

Query: 58  RTKTVXXXXXXXXEKYYTTINT*LLIQIKEYVKKSLSFLPSL-LGIKLLDLPHI**GVSD 234
           RTKTV        EKYYT +   L     + + + ++ +P+  L  K+        G   
Sbjct: 5   RTKTVKKAAKVIIEKYYTRLT--LDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLR 62

Query: 235 TRKCEESSIKLXEXERERRDNYVPXVSALE 324
             +    SIKL E ERERRDNYVP VSALE
Sbjct: 63  HSQVRGISIKLQEEERERRDNYVPAVSALE 92


>BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p
           protein.
          Length = 131

 Score = 83.8 bits (198), Expect = 5e-17
 Identities = 38/44 (86%), Positives = 40/44 (90%)
 Frame = +3

Query: 123 LTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGI 254
           L F TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGI
Sbjct: 26  LDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGI 69



 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 35/90 (38%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +1

Query: 58  RTKTVXXXXXXXXEKYYTTINT*LLIQIKEYVKKSLSFLPSL-LGIKLLDLPHI**GVSD 234
           RTKTV        EKYYT +   L     + + + ++ +P+  L  K+        G   
Sbjct: 5   RTKTVKKAAKVIIEKYYTRLT--LDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLR 62

Query: 235 TRKCEESSIKLXEXERERRDNYVPXVSALE 324
             +    SIKL E ERERRDNYVP VSALE
Sbjct: 63  HSQVRGISIKLQEEERERRDNYVPAVSALE 92


>AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal
           protein S17 protein.
          Length = 131

 Score = 83.8 bits (198), Expect = 5e-17
 Identities = 38/44 (86%), Positives = 40/44 (90%)
 Frame = +3

Query: 123 LTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGI 254
           L F TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGI
Sbjct: 26  LDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGI 69



 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 35/90 (38%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +1

Query: 58  RTKTVXXXXXXXXEKYYTTINT*LLIQIKEYVKKSLSFLPSL-LGIKLLDLPHI**GVSD 234
           RTKTV        EKYYT +   L     + + + ++ +P+  L  K+        G   
Sbjct: 5   RTKTVKKAAKVIIEKYYTRLT--LDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLR 62

Query: 235 TRKCEESSIKLXEXERERRDNYVPXVSALE 324
             +    SIKL E ERERRDNYVP VSALE
Sbjct: 63  HSQVRGISIKLQEEERERRDNYVPAVSALE 92


>AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB
           protein.
          Length = 131

 Score = 83.8 bits (198), Expect = 5e-17
 Identities = 38/44 (86%), Positives = 40/44 (90%)
 Frame = +3

Query: 123 LTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGI 254
           L F TNKRICEE+AIIPTKPLRNKIAG+ THLM RLRHSQVRGI
Sbjct: 26  LDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLRHSQVRGI 69



 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 35/90 (38%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +1

Query: 58  RTKTVXXXXXXXXEKYYTTINT*LLIQIKEYVKKSLSFLPSL-LGIKLLDLPHI**GVSD 234
           RTKTV        EKYYT +   L     + + + ++ +P+  L  K+        G   
Sbjct: 5   RTKTVKKAAKVIIEKYYTRLT--LDFHTNKRICEEVAIIPTKPLRNKIAGYVTHLMGRLR 62

Query: 235 TRKCEESSIKLXEXERERRDNYVPXVSALE 324
             +    SIKL E ERERRDNYVP VSALE
Sbjct: 63  HSQVRGISIKLQEEERERRDNYVPAVSALE 92


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,352,228
Number of Sequences: 53049
Number of extensions: 220367
Number of successful extensions: 470
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 798368334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)