Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E08
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   5.4  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              20   7.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   9.5  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 182 RLGRNDSDFFTYSFIC 135
           RLGR  S +FT++  C
Sbjct: 324 RLGREISTYFTFTRPC 339


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 202 PAILFLRGLVGMIAISSHILLFVSKVKC 119
           P  LF    +GM A   H   + S +KC
Sbjct: 33  PEALFQPSFLGMEACGIHETTYNSIMKC 60


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 200 WICHTFNEASQTLASA 247
           WIC   N+A   + SA
Sbjct: 237 WICELTNDAGYVVYSA 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,397
Number of Sequences: 438
Number of extensions: 1548
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)