Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_E08
(343 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 68 2e-12
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 68 2e-12
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 68 2e-12
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 68 2e-12
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 68 2e-12
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH... 27 3.3
At1g01690.1 68414.m00087 expressed protein 27 3.3
At4g15240.1 68417.m02336 fringe-related protein + weak similarit... 26 5.7
At4g14850.1 68417.m02282 pentatricopeptide (PPR) repeat-containi... 26 5.7
At4g10920.1 68417.m01775 transcriptional coactivator p15 (PC4) f... 26 7.6
At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transfera... 26 7.6
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 67.7 bits (158), Expect = 2e-12
Identities = 37/70 (52%), Positives = 47/70 (67%)
Frame = +3
Query: 45 MGRVPD*NRQESGEDYY*KILYND*HLTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMR 224
MGRV ++S K Y+ L F TNK+I EE+AIIP+K LRNKIAGF+THLM+
Sbjct: 1 MGRVRTKTVKKSSRQVIEKY-YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMK 59
Query: 225 RLRHSQVRGI 254
R++ VRGI
Sbjct: 60 RIQKGPVRGI 69
Score = 33.5 bits (73), Expect = 0.038
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Frame = +1
Query: 58 RTKTVXXXXXXXXEKYYTTINT*LLIQIKEYVKKSLSFLPSL-LGIKLLDLP-HI**GVS 231
RTKTV EKYY+ + L + + + ++ +PS L K+ H+ +
Sbjct: 5 RTKTVKKSSRQVIEKYYSRMT--LDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQ 62
Query: 232 DTRKCEESSIKLXEXERERRDNYVPXVSALET 327
S+KL E ERERR ++VP SA++T
Sbjct: 63 KG-PVRGISLKLQEEERERRMDFVPDESAIKT 93
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 67.7 bits (158), Expect = 2e-12
Identities = 37/70 (52%), Positives = 47/70 (67%)
Frame = +3
Query: 45 MGRVPD*NRQESGEDYY*KILYND*HLTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMR 224
MGRV ++S K Y+ L F TNK+I EE+AIIP+K LRNKIAGF+THLM+
Sbjct: 1 MGRVRTKTVKKSSRQVIEKY-YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMK 59
Query: 225 RLRHSQVRGI 254
R++ VRGI
Sbjct: 60 RIQKGPVRGI 69
Score = 33.5 bits (73), Expect = 0.038
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Frame = +1
Query: 58 RTKTVXXXXXXXXEKYYTTINT*LLIQIKEYVKKSLSFLPSL-LGIKLLDLP-HI**GVS 231
RTKTV EKYY+ + L + + + ++ +PS L K+ H+ +
Sbjct: 5 RTKTVKKSSRQVIEKYYSRMT--LDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQ 62
Query: 232 DTRKCEESSIKLXEXERERRDNYVPXVSALET 327
S+KL E ERERR ++VP SA++T
Sbjct: 63 KG-PVRGISLKLQEEERERRMDFVPDESAIKT 93
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 67.7 bits (158), Expect = 2e-12
Identities = 37/70 (52%), Positives = 47/70 (67%)
Frame = +3
Query: 45 MGRVPD*NRQESGEDYY*KILYND*HLTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMR 224
MGRV ++S K Y+ L F TNK+I EE+AIIP+K LRNKIAGF+THLM+
Sbjct: 1 MGRVRTKTVKKSSRQVIEKY-YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMK 59
Query: 225 RLRHSQVRGI 254
R++ VRGI
Sbjct: 60 RIQKGPVRGI 69
Score = 31.5 bits (68), Expect = 0.15
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +1
Query: 58 RTKTVXXXXXXXXEKYYTTINT*LLIQIKEYVKKSLSFLPSL-LGIKLLDLP-HI**GVS 231
RTKTV EKYY+ + L + + + ++ +PS L K+ H+ +
Sbjct: 5 RTKTVKKSSRQVIEKYYSRMT--LDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQ 62
Query: 232 DTRKCEESSIKLXEXERERRDNYVPXVSALE 324
S+KL E ERERR ++VP SA++
Sbjct: 63 KG-PVRGISLKLQEEERERRMDFVPDESAIK 92
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 67.7 bits (158), Expect = 2e-12
Identities = 37/70 (52%), Positives = 47/70 (67%)
Frame = +3
Query: 45 MGRVPD*NRQESGEDYY*KILYND*HLTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMR 224
MGRV ++S K Y+ L F TNK+I EE+AIIP+K LRNKIAGF+THLM+
Sbjct: 1 MGRVRTKTVKKSSRQVIEKY-YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMK 59
Query: 225 RLRHSQVRGI 254
R++ VRGI
Sbjct: 60 RIQKGPVRGI 69
Score = 33.5 bits (73), Expect = 0.038
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Frame = +1
Query: 58 RTKTVXXXXXXXXEKYYTTINT*LLIQIKEYVKKSLSFLPSL-LGIKLLDLP-HI**GVS 231
RTKTV EKYY+ + L + + + ++ +PS L K+ H+ +
Sbjct: 5 RTKTVKKSSRQVIEKYYSRMT--LDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQ 62
Query: 232 DTRKCEESSIKLXEXERERRDNYVPXVSALET 327
S+KL E ERERR ++VP SA++T
Sbjct: 63 KG-PVRGISLKLQEEERERRMDFVPDESAIKT 93
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 67.7 bits (158), Expect = 2e-12
Identities = 37/70 (52%), Positives = 47/70 (67%)
Frame = +3
Query: 45 MGRVPD*NRQESGEDYY*KILYND*HLTFDTNKRICEEIAIIPTKPLRNKIAGFATHLMR 224
MGRV ++S K Y+ L F TNK+I EE+AIIP+K LRNKIAGF+THLM+
Sbjct: 1 MGRVRTKTVKKSSRQVIEKY-YSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMK 59
Query: 225 RLRHSQVRGI 254
R++ VRGI
Sbjct: 60 RIQKGPVRGI 69
Score = 33.5 bits (73), Expect = 0.038
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Frame = +1
Query: 58 RTKTVXXXXXXXXEKYYTTINT*LLIQIKEYVKKSLSFLPSL-LGIKLLDLP-HI**GVS 231
RTKTV EKYY+ + L + + + ++ +PS L K+ H+ +
Sbjct: 5 RTKTVKKSSRQVIEKYYSRMT--LDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQ 62
Query: 232 DTRKCEESSIKLXEXERERRDNYVPXVSALET 327
S+KL E ERERR ++VP SA++T
Sbjct: 63 KG-PVRGISLKLQEEERERRMDFVPDESAIKT 93
>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
identical to SP|Q9SMV7 DNA mismatch repair protein
MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
thaliana}; GC donor splice site at exon 11
Length = 1109
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 127 LLIQIKEYVKKSLSFLPSLLGIKLL 201
LL +IK V+ S S LP+LLG K+L
Sbjct: 641 LLGRIKSSVRSSASVLPALLGKKVL 665
>At1g01690.1 68414.m00087 expressed protein
Length = 742
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 203 ICHTFNEASQTLASARNP 256
ICHTF Q LAS R P
Sbjct: 244 ICHTFTREIQVLASLRTP 261
>At4g15240.1 68417.m02336 fringe-related protein + weak similarity
to Fringe [Schistocerca gregaria](GI:6573138);Fringe
encodes an extracellular protein that regulates Notch
signalling.
Length = 488
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 132 QKSSVNRCIVFFNNNLRRFLDGFSPGHDPWLK 37
Q SS+ R + F+ R L + HD WL+
Sbjct: 65 QISSIARSLSVFSTRRRHLLFSIAASHDSWLR 96
>At4g14850.1 68417.m02282 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 651
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -2
Query: 153 HIFFYLYQKSSVNRCIVFFNNNLRRFLDGFSPGHDPW 43
H FF S IV NN RF DG D W
Sbjct: 615 HSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 651
>At4g10920.1 68417.m01775 transcriptional coactivator p15 (PC4)
family protein (KELP) similar to SP|P53999 Activated RNA
polymerase II transcriptional coactivator p15 (PC4)
(p14) {Homo sapiens}; contains Pfam profile PF02229:
Transcriptional Coactivator p15 (PC4); supporting cDNA
gi|2997685|gb|AF053303.1|AF053303
Length = 165
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 130 LIQIKEYVKKSLSFLPSLLGIKLLD 204
L+ I+EY KK LP+ GI L D
Sbjct: 117 LVSIREYYKKDGKELPTSKGISLTD 141
>At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 467
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 142 KEYVKKSLSFLPSLLGIKLLDLP 210
KEY+ + ++PS+ +KL D+P
Sbjct: 179 KEYLDTVIDWIPSMNNVKLKDIP 201
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,478,215
Number of Sequences: 28952
Number of extensions: 108362
Number of successful extensions: 242
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 409426656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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