Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E03
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   4.1  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   7.1  
SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   9.4  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   9.4  

>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 560 VNEHPTHSEKINGNEVTTQIVPN 492
           V  HP+HSE  + +E T ++ P+
Sbjct: 57  VGPHPSHSENASDSETTLEVSPD 79


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 489 FVWYNLCCDLISIYLF*MCWMFIDTQMGSNVL 584
           F+W  L  +L ++ L  M  + +D Q+  N+L
Sbjct: 283 FLWQGLSLELFTVCLVIMAHLHVDVQIPPNIL 314


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -1

Query: 195 FISLFXSTTSELCTTILIIYFA----LFYTVNKCHRLVPIIAMIY*SMVI 58
           FI++   T  +     +++ FA    LF  + KCHR    +A  Y + VI
Sbjct: 260 FITILWGTFQDAKNLFMVMDFAEGGELFSLLRKCHRFPEKVAKFYAAEVI 309


>SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 559 THRWAQMYYFAAFIVIFQIGWAAVQI 636
           T++ A ++    FI++F  GWAA  I
Sbjct: 42  TYKEAFVFNTVVFIIVFLTGWAAKSI 67


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 100 ISTYNSYDILIHGYKY 53
           I+ +N Y+  IHG+KY
Sbjct: 468 ITFFNGYNAFIHGFKY 483


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 400 DALATPFIGYHSDHTDNFWSAKYGRRKLWHLFGTICVVT 516
           DAL+T  + Y SD       A  G+ K+W +    C+VT
Sbjct: 340 DALST--LQYSSDGQRIITGADDGKIKVWDMNSGFCIVT 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,967
Number of Sequences: 5004
Number of extensions: 55435
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)