BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_E03 (648 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 27 3.1 SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 4.1 SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt... 25 7.1 SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.1 SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 25 9.4 SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 25 9.4 >SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr 1|||Manual Length = 563 Score = 26.6 bits (56), Expect = 3.1 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = -2 Query: 560 VNEHPTHSEKINGNEVTTQIVPN 492 V HP+HSE + +E T ++ P+ Sbjct: 57 VGPHPSHSENASDSETTLEVSPD 79 >SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1210 Score = 26.2 bits (55), Expect = 4.1 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = +3 Query: 489 FVWYNLCCDLISIYLF*MCWMFIDTQMGSNVL 584 F+W L +L ++ L M + +D Q+ N+L Sbjct: 283 FLWQGLSLELFTVCLVIMAHLHVDVQIPPNIL 314 >SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 512 Score = 25.4 bits (53), Expect = 7.1 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Frame = -1 Query: 195 FISLFXSTTSELCTTILIIYFA----LFYTVNKCHRLVPIIAMIY*SMVI 58 FI++ T + +++ FA LF + KCHR +A Y + VI Sbjct: 260 FITILWGTFQDAKNLFMVMDFAEGGELFSLLRKCHRFPEKVAKFYAAEVI 309 >SPAC23A1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 101 Score = 25.4 bits (53), Expect = 7.1 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = +1 Query: 559 THRWAQMYYFAAFIVIFQIGWAAVQI 636 T++ A ++ FI++F GWAA I Sbjct: 42 TYKEAFVFNTVVFIIVFLTGWAAKSI 67 >SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr 3|||Manual Length = 521 Score = 25.0 bits (52), Expect = 9.4 Identities = 8/16 (50%), Positives = 12/16 (75%) Frame = -3 Query: 100 ISTYNSYDILIHGYKY 53 I+ +N Y+ IHG+KY Sbjct: 468 ITFFNGYNAFIHGFKY 483 >SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 854 Score = 25.0 bits (52), Expect = 9.4 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = +1 Query: 400 DALATPFIGYHSDHTDNFWSAKYGRRKLWHLFGTICVVT 516 DAL+T + Y SD A G+ K+W + C+VT Sbjct: 340 DALST--LQYSSDGQRIITGADDGKIKVWDMNSGFCIVT 376 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,707,967 Number of Sequences: 5004 Number of extensions: 55435 Number of successful extensions: 146 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 144 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 146 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 291768710 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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