Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E03
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387...    75   5e-14
03_01_0475 + 3656628-3656791,3656944-3657013,3657114-3657310,365...    69   2e-12
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448...    29   3.2  
01_01_0425 + 3221303-3222602,3222710-3222928,3223010-3223114,322...    28   7.4  
09_03_0016 - 11552732-11552835,11553685-11553811,11553918-115541...    27   9.7  

>07_03_1019 +
           23337543-23337697,23338315-23338384,23338555-23338740,
           23339006-23339080,23339161-23339240,23339357-23339483,
           23340608-23340667,23341926-23341976,23342048-23342206,
           23342528-23342660,23343097-23343166,23343516-23343570
          Length = 406

 Score = 74.9 bits (176), Expect = 5e-14
 Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
 Frame = +1

Query: 262 LGYGIGHVLNDVCASXXXXXXXXXXXXXXXXSNVQSGTLMLVGQMVDALATPFIGYHSDH 441
           L YG GH+LND+ +S                S   +  +ML GQ+ D  AT F+G   D 
Sbjct: 20  LSYGSGHMLNDITSSCWFTYLLVFLTDIGL-SPSDAAVVMLSGQLADGFATIFVGELID- 77

Query: 442 TDNFWSAKYGRRKLWHLFGTICVVTSFPFIFSECVGCSLT---HRWAQMYYFAAFIVIFQ 612
                  ++G  KLWH  G+I V  SF  +F  C+ C LT       +   ++ F  IF 
Sbjct: 78  -------RFGHFKLWHAGGSILVAISFSSVFGSCLPCKLTGTISSTMETVGYSTFAAIFN 130

Query: 613 IGWAAVQISHLS 648
           +GWA  QI++LS
Sbjct: 131 VGWAVTQIANLS 142


>03_01_0475 +
           3656628-3656791,3656944-3657013,3657114-3657310,
           3657409-3657484,3657794-3657877,3658247-3658326,
           3658422-3658548,3658727-3658786,3658874-3658924,
           3659013-3659171,3659296-3659428,3659545-3659717
          Length = 457

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
 Frame = +1

Query: 262 LGYGIGHVLNDVCASXXXXXXXXXXXXXXXXSNVQSGTLMLVGQMVDALATPFIGYHSDH 441
           L YG+GH+LND+ ++                    +  +ML GQ+ D L T   G   D 
Sbjct: 23  LSYGVGHMLNDITSACWFTYLLLFLQEIGLAPR-DAAIVMLSGQVADGLMTILAGEMID- 80

Query: 442 TDNFWSAKYGRRKLWHLFGTICVVTSFPFIFSECVGCSL--THRW-AQMYYFAAFIVIFQ 612
                  ++G  KLWH+ G+I V  SF  +F  C+ C++  T  +  +   ++ F  +F 
Sbjct: 81  -------RFGHFKLWHIGGSILVGISFSSVFGGCLLCTVLGTDSYLVRTIGYSFFAAVFN 133

Query: 613 IGWAAVQISHLS 648
           IGWAA Q+SH+S
Sbjct: 134 IGWAATQVSHMS 145


>08_01_0514 +
           4481383-4481903,4482532-4484590,4485038-4485107,
           4485434-4485660,4486238-4486324,4486408-4487114,
           4487206-4487270,4487323-4487837,4487898-4487991,
           4488116-4488398,4488494-4488689,4488913-4489254
          Length = 1721

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 591 CFYCHIPNWMGSSAN 635
           CF C +PNWM S  N
Sbjct: 674 CFICKVPNWMSSLGN 688


>01_01_0425 +
           3221303-3222602,3222710-3222928,3223010-3223114,
           3223274-3223403,3223524-3224464,3224971-3225257
          Length = 993

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 546 WMFIDTQMGSNVLF-CCFYCHIPNWMGS 626
           W+   T + S VLF C FY  IP+W+G+
Sbjct: 391 WIRNCTSLESLVLFNCSFYGPIPSWIGN 418


>09_03_0016 -
           11552732-11552835,11553685-11553811,11553918-11554144,
           11554247-11554401,11554538-11554615,11555452-11555523,
           11555631-11555789,11556873-11556979
          Length = 342

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 4   TFPXRKIISHYIYINLRIYNHGLIYHSYYRY*SVAFIYCVK 126
           ++  R  + H + I  RI +HGLI  SY+ Y  V  I+ +K
Sbjct: 11  SYQDRWDLGHLVEIE-RILSHGLISPSYFPYSIVDAIWAIK 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,022,623
Number of Sequences: 37544
Number of extensions: 303806
Number of successful extensions: 627
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)