Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_E03
(648 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1) 135 3e-32
SB_9527| Best HMM Match : MFS_1 (HMM E-Value=0.022) 112 2e-25
SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.) 112 3e-25
SB_43258| Best HMM Match : BacA (HMM E-Value=1.8) 100 1e-21
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 88 5e-18
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41) 29 4.3
SB_9573| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_14567| Best HMM Match : MFS_1 (HMM E-Value=1.1)
Length = 600
Score = 135 bits (326), Expect = 3e-32
Identities = 60/134 (44%), Positives = 81/134 (60%)
Frame = +1
Query: 247 SLKLQLGYGIGHVLNDVCASXXXXXXXXXXXXXXXXSNVQSGTLMLVGQMVDALATPFIG 426
S + + Y GHVLND+CA ++ SGTL+L+GQ+VDA TPF+
Sbjct: 6 SWRCKFSYSSGHVLNDLCAGLWFTYLLIFLNKVALFTSSNSGTLLLIGQLVDACVTPFVA 65
Query: 427 YHSDHTDNFWSAKYGRRKLWHLFGTICVVTSFPFIFSECVGCSLTHRWAQMYYFAAFIVI 606
D N W +YGRRK+WHL G++ V +FPFIFS C+GC + +WA+ +Y+ FI I
Sbjct: 66 MDIDRIGN-W--RYGRRKVWHLIGSLMVAVTFPFIFSPCLGCLYSKQWAKFFYYVPFIFI 122
Query: 607 FQIGWAAVQISHLS 648
Q+GW QISHLS
Sbjct: 123 MQVGWGITQISHLS 136
>SB_9527| Best HMM Match : MFS_1 (HMM E-Value=0.022)
Length = 631
Score = 112 bits (270), Expect = 2e-25
Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Frame = +1
Query: 247 SLKLQLGYGIGHVLNDVCASXXXXXXXXXXXXXXXXSNVQSGTLMLVGQMVDALATPFIG 426
SL+ +L YG G V ND+CAS S+ ++G L ++ Q+VDA+ATPFIG
Sbjct: 25 SLRERLTYGAGQVFNDLCASVWLTYLLIYFHKVVGLSSAKTGYLFVIAQLVDAIATPFIG 84
Query: 427 YHSDHTDNFWSAKYGRRKLWHLFGTICVVTSFPFIFSECVGCSLTHRWAQMY-YFAAFIV 603
D + A YGRRK WHL G++ V ++PF+FS C GC +++ ++A ++
Sbjct: 85 IACDRYVPWCFAFYGRRKFWHLVGSLLVTFTWPFLFSPCKGCDENSSQSELLGHYAVVVI 144
Query: 604 IFQIGWAAVQISH 642
Q GWA VQ+SH
Sbjct: 145 FLQTGWACVQVSH 157
>SB_50258| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 795
Score = 112 bits (269), Expect = 3e-25
Identities = 53/137 (38%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Frame = +1
Query: 244 TSLKLQLGYGIGHVLNDVCASXXXXXXXXXXXXXXXXSNVQSGTLMLVGQMVDALATPFI 423
T LK + YG+GHV ND+C S V +G + L Q+ DA +TPFI
Sbjct: 22 TPLKQRFAYGVGHVFNDLCIQAWFSYSLIYFTKVMGLSAVNAGYIFLASQLADAFSTPFI 81
Query: 424 GYHSD-HTDNFWSAKYGRRKLWHLFGTICVVTSFPFIFSECVGC-SLTHRWAQMYYFAAF 597
GY D +YG +K+WHLFG + + +PF+FS C+ C T W + YF
Sbjct: 82 GYLCDRQITKIVGERYGNKKIWHLFGCVGIAIVWPFLFSPCLMCDENTEEWQKTTYFGIL 141
Query: 598 IVIFQIGWAAVQISHLS 648
+IF I W V+ISHLS
Sbjct: 142 TLIFNICWPMVEISHLS 158
>SB_43258| Best HMM Match : BacA (HMM E-Value=1.8)
Length = 215
Score = 100 bits (239), Expect = 1e-21
Identities = 50/133 (37%), Positives = 73/133 (54%)
Frame = +1
Query: 250 LKLQLGYGIGHVLNDVCASXXXXXXXXXXXXXXXXSNVQSGTLMLVGQMVDALATPFIGY 429
LK + +G+GH+LND+ +S SN +G ++L+GQ+ D + TPFIG
Sbjct: 24 LKQKASHGVGHILNDLVSSVWFTYLIIYLTKVVQLSNRHTGLVILLGQLADGIFTPFIGI 83
Query: 430 HSDHTDNFWSAKYGRRKLWHLFGTICVVTSFPFIFSECVGCSLTHRWAQMYYFAAFIVIF 609
D T +YGRRKLWHL G++ V +FP + + + A++ Y+ A +F
Sbjct: 84 LCDRT----VCQYGRRKLWHLIGSLLVTITFPLLLTRLLSHG-EGEAAKVAYYVAVAAVF 138
Query: 610 QIGWAAVQISHLS 648
Q GW VQISHLS
Sbjct: 139 QFGWGCVQISHLS 151
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 88.2 bits (209), Expect = 5e-18
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 1/128 (0%)
Frame = +1
Query: 268 YGIGHVLNDVCASXXXXXXXXXXXXXXXXSNVQSGTLMLVGQMVDALATPFIGYHSDHTD 447
YG+GH+ ND+ S+ +G + L GQ+ ++ +P IGY D
Sbjct: 1221 YGVGHIQNDLLTYAAFSYLLVFLTKVIGISSSSTGIIFLCGQITNSFLSPVIGYACDRWK 1280
Query: 448 NFWSAKYGRRKLWHLFGTICVVTSFPFIFSECVGCS-LTHRWAQMYYFAAFIVIFQIGWA 624
+ +K+GRRK WHL G + + + PF+F C C+ W ++ + A V G+
Sbjct: 1281 VPFISKFGRRKAWHLVGVVVLFIAVPFLFMRCTPCADNPDEWMLLFNYIAVTVSMNFGFT 1340
Query: 625 AVQISHLS 648
AV+ISHLS
Sbjct: 1341 AVEISHLS 1348
>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
Length = 1682
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 363 AVWYTYVSRSNG*CFSHSFYW 425
A W+ Y + N CF HSF+W
Sbjct: 1444 AFWHLYTRKENQ-CFFHSFFW 1463
>SB_9573| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -1
Query: 252 ETCRYIYKFVIHFMLSCFCFISLFXSTT 169
E C+ +YK HF+L C + L S T
Sbjct: 65 ELCQCLYKMHFHFLLLCNAYSRLLDSLT 92
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,563,947
Number of Sequences: 59808
Number of extensions: 385859
Number of successful extensions: 914
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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