Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E03
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical pr...   119   2e-27
Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine r...    29   2.8  
Z92812-2|CAB07277.1|  213|Caenorhabditis elegans Hypothetical pr...    29   3.8  

>U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical
           protein F16H11.1 protein.
          Length = 501

 Score =  119 bits (287), Expect = 2e-27
 Identities = 60/142 (42%), Positives = 82/142 (57%), Gaps = 4/142 (2%)
 Frame = +1

Query: 235 DISTSLKLQLGYGIGHVLNDVCASXXXXXXXXXXXXXXXXSNVQSGTLMLVGQMVDALAT 414
           D   S   ++ +GIGH  ND+CAS                 + ++G LML+GQ+ DA++T
Sbjct: 29  DHDISFTKKIAFGIGHFYNDLCASMWFTYFMIYMEKVLKFQSSRAGMLMLIGQVTDAIST 88

Query: 415 PFIGYHSDHTDNFWSA---KYGRRKLWHLFGTICVVTSFPFIFSECVGC-SLTHRWAQMY 582
           P +G  SD   N   A   K GRR  WHL GT+ V  SFP IF++C  C S T  W ++ 
Sbjct: 89  PLVGIFSD--SNILPACFDKIGRRMSWHLIGTVLVSLSFPMIFNKCFLCKSTTSEWLKVL 146

Query: 583 YFAAFIVIFQIGWAAVQISHLS 648
           +F  FI++FQ GWA+VQISHL+
Sbjct: 147 WFVPFIMVFQFGWASVQISHLA 168


>Z81117-7|CAB03315.2|  329|Caenorhabditis elegans Hypothetical
           protein T06E6.6 protein.
          Length = 329

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/58 (24%), Positives = 23/58 (39%)
 Frame = +3

Query: 432 LGSYRQFLECKIWKTEALAFVWYNLCCDLISIYLF*MCWMFIDTQMGSNVLFCCFYCH 605
           L      L+ K         V + + C +  +Y+   C++    Q  +N  F CF CH
Sbjct: 220 LSQQTMMLQRKFLLANYTQIVSFFITCFIPYLYIMICCYLNYHNQSANNFAFICFSCH 277


>AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine
           receptor, class j protein37 protein.
          Length = 333

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 22  IISHYIYINLRIYNHGLIYHSYYRY*SVAF-IYCV 123
           ++SH+IY  L ++N  L    ++ Y +++F I+CV
Sbjct: 107 LLSHFIYRYLALHNSELTNDKFHTYMTISFGIFCV 141


>Z92812-2|CAB07277.1|  213|Caenorhabditis elegans Hypothetical
           protein T03E6.2 protein.
          Length = 213

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 204 CFCFISLFXSTTSELCTTILIIYFALFYTVNKCHR-LVPIIAMIY 73
           CF  ISL+ +    L  ++ + +F   ++  KC + L+P++ M +
Sbjct: 96  CFSTISLYLNRQLFLTLSLQVFFFFFNFSNRKCFQTLIPVVTMYF 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,861,158
Number of Sequences: 27780
Number of extensions: 308329
Number of successful extensions: 777
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)