Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_E03
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60070.1 68416.m06708 lactose permease-related contains weak ...    81   6e-16
At1g71890.1 68414.m08311 sucrose transporter / sucrose-proton sy...    30   1.2  
At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton sy...    29   2.7  
At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containi...    28   4.7  

>At3g60070.1 68416.m06708 lactose permease-related contains weak
           similarity to Lactose permease (Lactose-proton symport)
           (Lactose transport protein). (Swiss-Prot:O33814)
           [Staphylococcus xylosus]
          Length = 456

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 3/130 (2%)
 Frame = +1

Query: 268 YGIGHVLNDVCASXXXXXXXXXXXXXXXXSNVQSGTLMLVGQMVDALATPFIGYHSDHTD 447
           YG+GH+LND+ AS                S   +  +ML GQ+ DA AT F G   D   
Sbjct: 22  YGVGHMLNDITASCWFTYLLLFLTQIGL-SPRDAAIVMLSGQVADAFATIFTGELID--- 77

Query: 448 NFWSAKYGRRKLWHLFGTICVVTSFPFIFSECVGCSLTHR---WAQMYYFAAFIVIFQIG 618
                ++G  K+WH  G++ V  SF  +F  C+ CS+ H      + + ++ F  IF IG
Sbjct: 78  -----RFGHFKIWHAAGSLLVAISFSSVFGGCLPCSILHNDSLTLETFSYSMFAAIFNIG 132

Query: 619 WAAVQISHLS 648
           WAA Q+SH++
Sbjct: 133 WAATQVSHMA 142


>At1g71890.1 68414.m08311 sucrose transporter / sucrose-proton
           symporter (SUC5) nearly identical to sucrose transporter
           [Arabidopsis thaliana] GI:12057172
          Length = 512

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
 Frame = +1

Query: 367 SGTLMLVGQMVDALATPFIGYHSDHTDNFWSAKYGRRKLWHLFGTICVVTS-FPFIFSEC 543
           S  + L G +   +  P +GYHSD  +    +++GRR+ +   G   V  S F   F+  
Sbjct: 69  SSYMWLCGPISGMIVQPIVGYHSDRCE----SRFGRRRPFIAAGVALVAVSVFLIGFAAD 124

Query: 544 VGCSLTHRWAQMYYFAAFIVIFQIGWAAVQISH 642
           +G S   +        A I+IF  G+  + +++
Sbjct: 125 MGHSFGDKLENKVRTRA-IIIFLTGFWFLDVAN 156


>At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton
           symporter (SUC2) nearly identical to sucrose-proton
           symporter SUC2 [Arabidopsis thaliana] GI:407092
          Length = 512

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = +1

Query: 376 LMLVGQMVDALATPFIGYHSDHTDNFWSAKYGRRKLWHLFGT-ICVVTSFPFIFSECVGC 552
           + L G +   L  P +GYHSD      ++++GRR+ + + G  +  V  F   ++  +G 
Sbjct: 70  IWLCGPISGMLVQPIVGYHSDRC----TSRFGRRRPFIVAGAGLVTVAVFLIGYAADIGH 125

Query: 553 SLTHRWAQMYYFAAFIVIFQIGWAAVQISH 642
           S+  +  +     A I IF +G+  + +++
Sbjct: 126 SMGDQLDKPPKTRA-IAIFALGFWILDVAN 154


>At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 839

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 85  SYDILIHGYKYVGLCRCSEKLFSFXEKS 2
           SY+ +I GY Y G  + + KLFS  E S
Sbjct: 506 SYNTMISGYSYNGFGKKALKLFSMLESS 533


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,606,997
Number of Sequences: 28952
Number of extensions: 267869
Number of successful extensions: 596
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)