Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D24
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    73   3e-14
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    71   1e-13
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    66   4e-12
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   2.6  
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.0  

>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 72.5 bits (170), Expect = 3e-14
 Identities = 42/110 (38%), Positives = 57/110 (51%)
 Frame = +1

Query: 82  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEXINVRFLIT 261
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALE  +++ L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 262 NIGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDDMGFGLF 411
           NIGSG                                    D+DMGFGLF
Sbjct: 61  NIGSGAGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEES--DEDMGFGLF 108


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 70.5 bits (165), Expect = 1e-13
 Identities = 41/110 (37%), Positives = 56/110 (50%)
 Frame = +1

Query: 82  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEXINVRFLIT 261
           +S +ELA  YSALIL D+ + +T +K+ ++ KAA VDVEP W  +FAKALE  +++ L+ 
Sbjct: 1   MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60

Query: 262 NIGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDDMGFGLF 411
           NIGS                                     D+DMGFGLF
Sbjct: 61  NIGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEES-DEDMGFGLF 109


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 65.7 bits (153), Expect = 4e-12
 Identities = 38/110 (34%), Positives = 55/110 (50%)
 Frame = +1

Query: 82  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEXINVRFLIT 261
           +S +ELA  Y+ALIL D+ + +T +K+ ++ KA  V+VEP W  +FAKALE  +++ L+ 
Sbjct: 1   MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60

Query: 262 NIGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDDMGFGLF 411
           NIGS                                     D+DMGFGLF
Sbjct: 61  NIGSAGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEES--DEDMGFGLF 108


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 23/83 (27%), Positives = 37/83 (44%)
 Frame = +1

Query: 28  CSPLS*GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYW 207
           CSP S G  QL +S++ ++  A    +   L +VD  +A   E         A ++ P  
Sbjct: 101 CSPTSTGASQLLKSRVDILEVARQFEMRINLDIVDSMIASAIEN-----NKVATEILPPV 155

Query: 208 PGLFAKALEXINVRFLITNIGSG 276
             L ++  E   +R +  NI SG
Sbjct: 156 ETLRSRQFEASKLREIRKNIDSG 178


>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 315

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 46  GLRQLARSKLKMVSKAELACVYSAL 120
           G+ QL    + ++SKA+L C Y  L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,525,049
Number of Sequences: 5004
Number of extensions: 23591
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)