BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_D24 (486 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 73 3e-14 SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 71 1e-13 SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 66 4e-12 SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 2.6 SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.0 >SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual Length = 109 Score = 72.5 bits (170), Expect = 3e-14 Identities = 42/110 (38%), Positives = 57/110 (51%) Frame = +1 Query: 82 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEXINVRFLIT 261 +S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALE +++ L+ Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60 Query: 262 NIGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDDMGFGLF 411 NIGSG D+DMGFGLF Sbjct: 61 NIGSGAGAAPVAGGAAAPAAADGEAPAEEKEEAKEEEES--DEDMGFGLF 108 >SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual Length = 110 Score = 70.5 bits (165), Expect = 1e-13 Identities = 41/110 (37%), Positives = 56/110 (50%) Frame = +1 Query: 82 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEXINVRFLIT 261 +S +ELA YSALIL D+ + +T +K+ ++ KAA VDVEP W +FAKALE +++ L+ Sbjct: 1 MSASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLL 60 Query: 262 NIGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDDMGFGLF 411 NIGS D+DMGFGLF Sbjct: 61 NIGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEES-DEDMGFGLF 109 >SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual Length = 109 Score = 65.7 bits (153), Expect = 4e-12 Identities = 38/110 (34%), Positives = 55/110 (50%) Frame = +1 Query: 82 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEXINVRFLIT 261 +S +ELA Y+ALIL D+ + +T +K+ ++ KA V+VEP W +FAKALE +++ L+ Sbjct: 1 MSASELATSYAALILADEGIEITSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLL 60 Query: 262 NIGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDDMGFGLF 411 NIGS D+DMGFGLF Sbjct: 61 NIGSAGAASAPTAAGAGAAAPAEAAEEEKKEEAKEEEES--DEDMGFGLF 108 >SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 661 Score = 26.2 bits (55), Expect = 2.6 Identities = 23/83 (27%), Positives = 37/83 (44%) Frame = +1 Query: 28 CSPLS*GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYW 207 CSP S G QL +S++ ++ A + L +VD +A E A ++ P Sbjct: 101 CSPTSTGASQLLKSRVDILEVARQFEMRINLDIVDSMIASAIEN-----NKVATEILPPV 155 Query: 208 PGLFAKALEXINVRFLITNIGSG 276 L ++ E +R + NI SG Sbjct: 156 ETLRSRQFEASKLREIRKNIDSG 178 >SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 315 Score = 24.6 bits (51), Expect = 8.0 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = +1 Query: 46 GLRQLARSKLKMVSKAELACVYSAL 120 G+ QL + ++SKA+L C Y L Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,525,049 Number of Sequences: 5004 Number of extensions: 23591 Number of successful extensions: 78 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 78 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 188065158 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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