Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D24
         (486 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0113 + 897970-898038,898148-898271,898811-898896,898996-89...    78   3e-15
02_02_0220 - 7992124-7992351,7992458-7992562,7993499-7993711,799...    29   1.5  
07_03_0035 - 12677942-12678568                                         28   3.5  
10_08_0552 - 18714062-18714191,18714288-18714565,18714921-187149...    28   4.6  

>08_01_0113 +
           897970-898038,898148-898271,898811-898896,898996-899049
          Length = 110

 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 36/65 (55%), Positives = 49/65 (75%)
 Frame = +1

Query: 82  VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEXINVRFLIT 261
           +S +E+AC  +ALIL DD + +T EKI+T++KAA + VE YWPGLFAK LE  +V  LI 
Sbjct: 1   MSSSEVACTLAALILHDDGIPITSEKIATLVKAANIKVEAYWPGLFAKLLEHRSVDDLIL 60

Query: 262 NIGSG 276
           ++GSG
Sbjct: 61  SVGSG 65


>02_02_0220 -
           7992124-7992351,7992458-7992562,7993499-7993711,
           7993937-7994196,7994425-7994701,7995226-7995371,
           7995519-7995903,7996680-7996964
          Length = 632

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +1

Query: 46  GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKIST 168
           G+R+LA+     V+K +     S  +L+ +DVA+TG+ ++T
Sbjct: 249 GIRKLAQIFQSSVAKKKAVGKKSKALLLGEDVAITGDCVTT 289


>07_03_0035 - 12677942-12678568
          Length = 208

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/42 (45%), Positives = 21/42 (50%)
 Frame = +2

Query: 206 GQVCSPKPWXASMSVF*SPTSALEWVLLRPLVECQPLXLQPA 331
           G V SP  + A M    SPT+A  W LLRP     PL L  A
Sbjct: 96  GVVASPARFGAVMLA--SPTAANRWFLLRPARLPLPLALPAA 135


>10_08_0552 -
           18714062-18714191,18714288-18714565,18714921-18714968,
           18715222-18715308,18715522-18715634,18717140-18717349,
           18717368-18717434
          Length = 310

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
 Frame = +3

Query: 138 CCRNW*ENFHHLE---SGGCRCRAILARSVRQSLGXHQCPFFDHQHRLWSGC 284
           C  +W  NF HL    + GC       R    + G H    + H++R W  C
Sbjct: 120 CHGSWRSNFPHLAVTLTCGCLVSGNAVRGFGGNHGVHSACVYYHKYRNWPFC 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,302,188
Number of Sequences: 37544
Number of extensions: 174763
Number of successful extensions: 490
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)