Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D24
         (486 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              96   1e-20
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        34   0.071
SB_86| Best HMM Match : PGK (HMM E-Value=0)                            27   8.2  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 50/111 (45%), Positives = 62/111 (55%)
 Frame = +1

Query: 79  MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEXINVRFLI 258
           M S +ELACVYSALIL DDDVA+T +KI T++KAA ++VEP+WPGLFAKAL+  N+  LI
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI 60

Query: 259 TNIGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDDMGFGLF 411
             + +G                                    DDDMGFGLF
Sbjct: 61  --LSAGAPGAGGAVAAAPAAGGEAKAEEKKEEAKKEESEEESDDDMGFGLF 109


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -1

Query: 258 DQKTDIDAFQGFGEQTWPIWLYIYSRRFQDGGNFLTSYGNIIINQDESR 112
           DQ   I+ F+  G++ WP +  + S R + GG+ +      II  DESR
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGSAVLQ----IICIDESR 146


>SB_86| Best HMM Match : PGK (HMM E-Value=0)
          Length = 445

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 184 PPLSRWWKFSHQLRQHHHQ 128
           PP  RWW++ H LRQ  H+
Sbjct: 394 PP--RWWRYRHVLRQMGHR 410


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,583,213
Number of Sequences: 59808
Number of extensions: 177940
Number of successful extensions: 425
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)