Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_D24
(486 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 78 4e-15
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 78 4e-15
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 77 6e-15
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 77 6e-15
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 77 8e-15
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 76 1e-14
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co... 38 0.004
At1g32600.1 68414.m04023 F-box family protein-related contains T... 29 1.7
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 28 3.8
At2g31160.1 68415.m03804 expressed protein contains Pfam profile... 27 8.9
At1g29120.2 68414.m03565 expressed protein 27 8.9
At1g29120.1 68414.m03564 expressed protein 27 8.9
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 77.8 bits (183), Expect = 4e-15
Identities = 41/111 (36%), Positives = 55/111 (49%)
Frame = +1
Query: 79 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEXINVRFLI 258
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV LI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 259 TNIGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDDMGFGLF 411
N+G+G D D+GFGLF
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLF 111
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 77.8 bits (183), Expect = 4e-15
Identities = 41/111 (36%), Positives = 55/111 (49%)
Frame = +1
Query: 79 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEXINVRFLI 258
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV LI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 259 TNIGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDDMGFGLF 411
N+G+G D D+GFGLF
Sbjct: 61 MNVGAGGGGGAPVAAAAPAAGGGAAAAPAAEEKKKDEPAEESDGDLGFGLF 111
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/66 (51%), Positives = 48/66 (72%)
Frame = +1
Query: 79 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEXINVRFLI 258
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV LI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 259 TNIGSG 276
N+G+G
Sbjct: 61 MNVGAG 66
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 77.0 bits (181), Expect = 6e-15
Identities = 34/66 (51%), Positives = 48/66 (72%)
Frame = +1
Query: 79 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEXINVRFLI 258
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV LI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 259 TNIGSG 276
N+G+G
Sbjct: 61 MNVGAG 66
>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
Length = 111
Score = 76.6 bits (180), Expect = 8e-15
Identities = 35/65 (53%), Positives = 46/65 (70%)
Frame = +1
Query: 82 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEXINVRFLIT 261
+S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK E N+ LI
Sbjct: 1 MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60
Query: 262 NIGSG 276
N+G+G
Sbjct: 61 NVGAG 65
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 75.8 bits (178), Expect = 1e-14
Identities = 34/66 (51%), Positives = 47/66 (71%)
Frame = +1
Query: 79 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEXINVRFLI 258
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV LI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60
Query: 259 TNIGSG 276
N+G+G
Sbjct: 61 MNVGAG 66
>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
contains weak similarity to Swiss-Prot:52855 60S acidic
ribosomal protein P1 (L12) [Zea mays]
Length = 46
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +1
Query: 82 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 216
++ ELAC Y+AL+L D VT +ST++K A +++E YWP L
Sbjct: 1 MATGELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39
>At1g32600.1 68414.m04023 F-box family protein-related contains
TIGRFAM TIGR01640 : F-box protein interaction domain;
identical to hypothetical protein GB:AAF25964 GI:6714268
from [Arabidopsis thaliana]
Length = 293
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +1
Query: 82 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEXINVRFL 255
VS+ EL CV + VDD++ V +I + K A D +P W + E +++RF+
Sbjct: 186 VSRGEL-CVINHYPSVDDNLCVCRREIRSGKKIARWDSDP-WMNVAGNDDEPVDIRFV 241
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 230 KALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 123
+ +N P + S TAA KM +I SP+T +S R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317
>At2g31160.1 68415.m03804 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 219
Score = 26.6 bits (56), Expect = 8.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 254 KKRTLMXSKALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTRMRAE 111
K R + K RP STS+++A + F + TSS+T+++ E
Sbjct: 171 KARGVSYEKKKRKRPLPSSSTSSSSAVASHQQFQMLPGTSSTTQLKFE 218
>At1g29120.2 68414.m03565 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 8.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 58 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 201
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
>At1g29120.1 68414.m03564 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 8.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 58 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 201
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,163,560
Number of Sequences: 28952
Number of extensions: 132346
Number of successful extensions: 339
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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