Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_D21
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 251 6e-68
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 248 7e-67
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 27 2.4
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 26 5.5
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 7.2
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 25 7.2
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 25 9.5
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 9.5
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 25 9.5
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 25 9.5
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 251 bits (615), Expect = 6e-68
Identities = 125/180 (69%), Positives = 147/180 (81%)
Frame = +2
Query: 113 SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRA 292
+ RED VY AKLAEQAERY+ MVE MK+VAS +D ELTVEERNLLSVAYKNVIGARRA
Sbjct: 4 TSREDAVYLAKLAEQAERYEGMVENMKSVAS---TDQELTVEERNLLSVAYKNVIGARRA 60
Query: 293 SWRIISSIEQKEETKGAXXKLNMIRAYRSQVXKELRDICSDILGVLDKYLIPSSQTGESK 472
SWRI+SSIEQKEE+KG ++ +I+ YR ++ +EL IC DIL VL+K+LIP++ + ESK
Sbjct: 61 SWRIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESK 120
Query: 473 VFYYKMKGDYHRYLAEFATGNDRKEAAXNSLVAYKAXSDIAMTELAPTHPIRLGLALNFS 652
VFYYKMKGDY+RYLAEFA G R+ +A SL YKA S+IA ELAPTHPIRLGLALNFS
Sbjct: 121 VFYYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFS 180
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 248 bits (606), Expect = 7e-67
Identities = 123/180 (68%), Positives = 147/180 (81%)
Frame = +2
Query: 113 SEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRA 292
+ RE++VY AKLAEQAERY+EMVE MK VA N ++L+VEERNLLSVAYKN+IGARRA
Sbjct: 3 NSRENSVYLAKLAEQAERYEEMVENMKKVACSN---DKLSVEERNLLSVAYKNIIGARRA 59
Query: 293 SWRIISSIEQKEETKGAXXKLNMIRAYRSQVXKELRDICSDILGVLDKYLIPSSQTGESK 472
SWRIISSIEQKEE++G + +I+ YR ++ EL DIC D+L VL+K+LIP++ TGESK
Sbjct: 60 SWRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESK 119
Query: 473 VFYYKMKGDYHRYLAEFATGNDRKEAAXNSLVAYKAXSDIAMTELAPTHPIRLGLALNFS 652
VFYYKMKGDY+RYLAEF G KEAA +SL AYKA SDIA+ EL PT P+RLGLALNFS
Sbjct: 120 VFYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFS 179
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/61 (24%), Positives = 29/61 (47%)
Frame = +2
Query: 101 SSTMSEREDNVYKAKLAEQAERYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIG 280
SST S N ++ Q+E Y ++ + + + ++SD E +E R V +N +
Sbjct: 45 SSTRSSPASNQQNLEIVSQSEAYHKISDLDDSTSIFSISDQENILERRISEEVVRENSVS 104
Query: 281 A 283
+
Sbjct: 105 S 105
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -1
Query: 230 SAHCRTRCVMLHSSSPPPFRHSAQPAQLTLLYT--HYLPFPTL 108
S+H + + H P F S QLTLL + YLP P +
Sbjct: 486 SSHREKKSIYQHKEYMPDFLSSRDEFQLTLLESTWQYLPDPNV 528
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 356 NMIRAYRSQVXKELRDICSDILGVLDK 436
N +RA + ++ K+L+D+ + +LDK
Sbjct: 243 NQLRADKKKLKKDLKDLVEEFQPILDK 269
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +2
Query: 131 VYKAKLAEQAE----RYDEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARR 289
+YK KL E R DE+V MKN+ +N + +EL + ++N + + R
Sbjct: 202 IYKEKLRFSLESRKSRVDEIVNEMKNMCGKNPT-SELPTNYSDKTLTLWENELSSMR 257
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -1
Query: 134 THYLPFPTLWMTNDFTLTKS 75
T+YL FP + ND+TL+ +
Sbjct: 455 TYYLEFPGRFSVNDYTLSSN 474
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 9.5
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +2
Query: 170 DEMVEAMKNVASRNVSDNELTVEERNLLSVAYKNVIGARRASWRII-SSIEQKEETKGAX 346
D V +VAS +++ +E ++S +Y+++I + II SS+ E K
Sbjct: 432 DNSVPVPVDVASVSLNHFVYCIERLQIVSPSYEDIISLWSSLMIIISSSLGSDEIYKACL 491
Query: 347 XKLNMIRAYRSQVXKELRDICSDILGVLDK 436
L + S+ L DIC +L +L +
Sbjct: 492 LFLRKLEDVSSESVL-LGDICGIVLHLLQR 520
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -1
Query: 410 SRCHGAPXQPGC--GTL*SCSICXXRLLFLP 324
S CHG+ QPG T +C RL F+P
Sbjct: 241 SSCHGSGLQPGSHKSTCFACKGTGQRLHFIP 271
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 122 EDNVYKAKLAEQAERYDEMVEAMKNVASRNV 214
ED++++ + +Q Y E +E K ++NV
Sbjct: 713 EDSMHEIAIKKQHSTYSEALEVAKKAGTKNV 743
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,185
Number of Sequences: 5004
Number of extensions: 40797
Number of successful extensions: 153
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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