Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D20
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...   109   3e-25
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   2.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   2.3  
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    25   9.4  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.4  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score =  109 bits (263), Expect = 3e-25
 Identities = 64/160 (40%), Positives = 81/160 (50%), Gaps = 1/160 (0%)
 Frame = +2

Query: 110 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTPAERKTW 286
           L  LN +L +KS++ GY PSQAD  VF+ VG AP  A  P+  RWY QIA+Y  A     
Sbjct: 12  LKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATYDLA----- 66

Query: 287 SQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKK 466
              T P                     +DLFGS                 + Y  KK+ K
Sbjct: 67  ---TLPGTAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERVAE-YNKKKAAK 122

Query: 467 PALIAKSSILLDVKPWDDETDMXEMENQVRTIEMEGLLWG 586
           P  + KS + LDVKPWDDET M E+E  VR+I+M+GL+WG
Sbjct: 123 PKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWG 162



 Score = 32.3 bits (70), Expect = 0.062
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +1

Query: 592 SKLVPVGYGINKLQIMCVI 648
           SKLVPVG+G+NK QI  V+
Sbjct: 164 SKLVPVGFGVNKFQINLVV 182


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 298 GALRPSFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 188
           G L  S  F  ++ + +I+PS  +G   GR +  LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +2

Query: 107  ALNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTP 268
            +L+ +  YL++  Y    T  Q + Q+F      PA  L     W N + +Y P
Sbjct: 4647 SLDIMINYLSKMYYDDSLTIVQQNSQLFLSTVLDPAVGLSRKKFWNNYLTNYKP 4700


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = +2

Query: 437 KAYADKKSKKPALIAKSSILLDVKPWDDETDMXEMENQVRTIEMEGLLWGSPPNL 601
           KA  +  ++    +    + + ++ W++E    + E QVR + +  L WG   N+
Sbjct: 298 KAETEGTNEPETSVQIDPLNVSMENWENEMKNLDCETQVRQLALYLLCWGEANNI 352


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 110 LNDLNQYLAEKSYVSGYTPSQADVQVF 190
           L+ +++YL   ++++ Y PS+ D Q F
Sbjct: 300 LSLVSKYLLVSAFLASYNPSRLDAQFF 326


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 248 DYTIVVRGEG*RPAPCQLAQILEHQLE 168
           +Y +VV G G  P  C +   L  QLE
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLE 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,609
Number of Sequences: 5004
Number of extensions: 43230
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)