Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_D20
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 97 1e-20
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 88 6e-18
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 87 2e-17
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 36 0.021
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 28 7.4
01_03_0163 + 13346586-13347809 28 7.4
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 96.7 bits (230), Expect = 1e-20
Identities = 61/165 (36%), Positives = 82/165 (49%), Gaps = 5/165 (3%)
Frame = +2
Query: 110 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIA-----SYTPAE 274
L L++YL +SY+SGY S+ D+ VF + APAA+ +V RWY+ I+ S AE
Sbjct: 33 LQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSSGVTAE 92
Query: 275 RKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADK 454
+ ++ VDLFG +A A K
Sbjct: 93 GEGVKVESTACSVSPTADQKAPAADEEDDDDVDLFGEETEEEKKAAEE------RAAAVK 146
Query: 455 KSKKPALIAKSSILLDVKPWDDETDMXEMENQVRTIEMEGLLWGS 589
S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWG+
Sbjct: 147 ASGKKKESGKSSVLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGA 191
Score = 35.1 bits (77), Expect = 0.048
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +1
Query: 592 SKLVPVGYGINKLQIMCVI 648
SKLVPVGYGI KLQIM I
Sbjct: 192 SKLVPVGYGIKKLQIMMTI 210
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 87.8 bits (208), Expect = 6e-18
Identities = 55/164 (33%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Frame = +2
Query: 110 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYTPAERKTWS 289
L L Q+L+ K+YVSG S+ D++VF V P A P+ RWY+ +A+ + +
Sbjct: 14 LKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKA 73
Query: 290 QGTS----PLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKK 457
G + +DLFG + A K
Sbjct: 74 VGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAAD-------ERAASKA 126
Query: 458 SKKPALIAKSSILLDVKPWDDETDMXEMENQVRTIEMEGLLWGS 589
S K KSS+LLDVKPWDDETDM ++E VR+++MEGL WG+
Sbjct: 127 SSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGA 170
Score = 35.1 bits (77), Expect = 0.048
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +1
Query: 592 SKLVPVGYGINKLQIMCVI 648
SKLVPVGYGI KLQIM I
Sbjct: 171 SKLVPVGYGIKKLQIMLTI 189
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 86.6 bits (205), Expect = 2e-17
Identities = 58/168 (34%), Positives = 77/168 (45%), Gaps = 8/168 (4%)
Frame = +2
Query: 110 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQI-----ASYTPAE 274
L L++YL +SY+SGY S D+ V+ AP+++ +V RW+ I S A+
Sbjct: 14 LKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHIDALLRLSGVTAD 73
Query: 275 R---KTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAY 445
K S VDLFG +A
Sbjct: 74 GQGVKVESTAVPSASTPDVADAKAPAADDDDDDDVDLFGEETEEEKKAAEE------RAA 127
Query: 446 ADKKSKKPALIAKSSILLDVKPWDDETDMXEMENQVRTIEMEGLLWGS 589
A K S K KSS+LLDVKPWDDETDM ++E VR ++MEGLLWG+
Sbjct: 128 AVKASGKKKESGKSSVLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGA 175
Score = 35.1 bits (77), Expect = 0.048
Identities = 16/19 (84%), Positives = 16/19 (84%)
Frame = +1
Query: 592 SKLVPVGYGINKLQIMCVI 648
SKLVPVGYGI KLQIM I
Sbjct: 176 SKLVPVGYGIKKLQIMMTI 194
>01_06_1167 -
35062766-35062870,35063165-35063228,35063647-35063738,
35064137-35064205,35064322-35064412,35064509-35064732,
35065064-35065180,35065583-35065651,35066172-35066237,
35066335-35066505,35066581-35066661,35067620-35067700
Length = 409
Score = 36.3 bits (80), Expect = 0.021
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 9/57 (15%)
Frame = +2
Query: 110 LNDLNQYLAEKSYV--SGYTPSQADVQVFEQV-------GKAPAANLPHVLRWYNQI 253
L +LNQ L++KS + +G+ PS AD+ VF + G+ PHVLRW + I
Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Frame = +2
Query: 110 LNDLNQYLAEKSYVSGYTPSQADVQVFEQV---GKAPAANL----PHVLRWYNQIASYTP 268
L+ + +LA Y++G S AD + K P A L PHV W++ I+S P
Sbjct: 148 LDVYDAHLAGSRYLAGNRFSLADANHMSYLLFLSKTPMAELVASRPHVKAWWDDISS-RP 206
Query: 269 AERKT 283
A +KT
Sbjct: 207 AWKKT 211
>01_03_0163 + 13346586-13347809
Length = 407
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +2
Query: 509 PWDDETDMXEMENQVRTIEMEGLLWGSPPN 598
PWDD M + M+G LW +P N
Sbjct: 220 PWDDTFQPQVMRTGDHFVPMDGYLWQAPGN 249
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,173,169
Number of Sequences: 37544
Number of extensions: 304851
Number of successful extensions: 716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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