Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D20
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)             143   1e-34
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   6e-08
SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)               30   1.4  
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    30   1.4  
SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)                 30   1.9  
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             29   4.3  
SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_11701| Best HMM Match : Dpy-30 (HMM E-Value=0.29)                   27   9.9  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score =  143 bits (347), Expect = 1e-34
 Identities = 76/166 (45%), Positives = 95/166 (57%), Gaps = 6/166 (3%)
 Frame = +2

Query: 110 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASYT------PA 271
           L+ LN +L E+SY+ GY PSQAD  VFE +  AP A+LPH LRWYN I SY       P 
Sbjct: 12  LSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIVSYGEGKQNFPG 71

Query: 272 ERKTWSQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYAD 451
           E+K+  +   P                     +DLFGS                LKAY +
Sbjct: 72  EKKS-VESFGP--AGAASEQKPAPADDNDDDEIDLFGSDDEEEEKEAARIRQERLKAYEE 128

Query: 452 KKSKKPALIAKSSILLDVKPWDDETDMXEMENQVRTIEMEGLLWGS 589
           KK+KK  +IAKS+I+LDVKPWDDETDM EME  VR+I+ +GLLWG+
Sbjct: 129 KKAKKKPVIAKSNIMLDVKPWDDETDMAEMEKLVRSIQADGLLWGA 174



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +1

Query: 592 SKLVPVGYGINKLQIMCVI 648
           SKLVP+ YGI KLQI  V+
Sbjct: 175 SKLVPLAYGIKKLQITVVV 193


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 23/35 (65%), Positives = 25/35 (71%)
 Frame = +2

Query: 158 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIASY 262
           Y PSQAD  VFE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_42516| Best HMM Match : EF1_GNE (HMM E-Value=3.3e-05)
          Length = 416

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 592 SKLVPVGYGINKLQIMCVI 648
           +KLV + YG+ KLQI CVI
Sbjct: 116 TKLVEIAYGLKKLQITCVI 134


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 98  PPXALNDLNQYLAEKSYVSGYTPSQADVQ-VFEQVGK 205
           P   +N L + L EKS+  GY+P+ +DVQ V + V K
Sbjct: 58  PQFQVNKLPKGLIEKSWNFGYSPNTSDVQTVMQNVAK 94


>SB_15649| Best HMM Match : EF1_GNE (HMM E-Value=0.025)
          Length = 301

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 595 KLVPVGYGINKLQIMCVI 648
           KLV + YG+ KLQI CVI
Sbjct: 2   KLVEIAYGLKKLQITCVI 19


>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 500 DVKPW-DDETDMXEMENQVRTIEMEGLLWGSPPN 598
           DV PW  D TD  ++  +  TIE  G   G+ PN
Sbjct: 599 DVVPWVTDVTDQVKLNGKTNTIEYFGWFNGTDPN 632


>SB_56071| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 296 CPETKFCVQPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQ 153
           CP       PE    F  T+ +  EG     CQ+  IL H+++ EC++
Sbjct: 568 CPPFGISSAPEV---FQRTMSMTLEGLEGVVCQMDDILIHEVQDECVR 612


>SB_22051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 821

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 500 DVKPWDDETDMXEMEN 547
           DV+PWD  TD+ E EN
Sbjct: 653 DVRPWDPLTDLVEYEN 668


>SB_11701| Best HMM Match : Dpy-30 (HMM E-Value=0.29)
          Length = 355

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 311 RSMGWCPETKFCVQPECMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEK 165
           R++ W PE +  +Q +  ++  +T  +RG G    P  L     H  EK
Sbjct: 213 RALPWIPEKQLKMQRDTWRENKFTSCLRGFGGSEEPPHLTGASAHLREK 261


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,947,885
Number of Sequences: 59808
Number of extensions: 335048
Number of successful extensions: 666
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)