Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D19
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    30   0.27 
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    29   0.35 
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    29   0.62 
SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12 |Schizos...    28   1.1  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   3.3  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    25   7.6  

>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
 Frame = +1

Query: 247 NELPKKIKSRGKDAHMIHEELVQLMKWKQAXGKFYPQLSYLIKVNTPRAV----MQETKK 414
           +EL   +++ G +A     E++++++     GK Y Q+   ++V T + V    ++E K+
Sbjct: 57  HELRAAMRALGFNAEK--SEVLKILRDFDKTGKGYLQMEDFVRVMTEKIVERDPLEEIKR 114

Query: 415 AFRKLPNIESAMTALSNLKGV 477
           AF    + E+   +L NL+ V
Sbjct: 115 AFELFDDDETGKISLRNLRRV 135


>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 233

 Score = 29.5 bits (63), Expect = 0.35
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
 Frame = +1

Query: 124 LEANAKEFDSVLKLYPQAIKLKAERKTKRPXELIKLDNWYQNELPKK--IKSRGKDAHMI 297
           LE  +K+FD   +   +  K K ++K +   E    D   ++ELP+K   +S  KD H +
Sbjct: 13  LEYRSKKFDKKSQSLEEHEK-KVQQKNEE-LEKKAADKISRDELPEKQLAQSNDKDKHSV 70

Query: 298 HEELVQLMKWKQAXGKFYPQLSYLIKVNTPRAVMQETKKA-FRKLPNIESAMTALSNLKG 474
                + +K K+  GK   +   L   N P+    ET +  F++   + S         G
Sbjct: 71  SNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSG 130


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = +1

Query: 133 NAKEFD---SVLKLYPQAIKLKAERKTKRPXELIKLDNWYQNE-LP-KKIK 270
           + ++FD    +++  P A  +KAERKTKRP      +    NE +P KK+K
Sbjct: 88  SVEQFDFLQDIVEKVPDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVK 138


>SPBC32F12.05c |cwf12||complexed with Cdc5 protein Cwf12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 17/67 (25%), Positives = 29/67 (43%)
 Frame = +1

Query: 106 DTSTFFLEANAKEFDSVLKLYPQAIKLKAERKTKRPXELIKLDNWYQNELPKKIKSRGKD 285
           D   +     A+E   V +L+   +    ER+ K+  +  +LD WY   +P   +S  +D
Sbjct: 103 DIDDYRYYGRARELPGVKELFEADMSFIPERQRKQEMQKRRLDAWYFGYIPPAQESLLED 162

Query: 286 AHMIHEE 306
                EE
Sbjct: 163 FEAKIEE 169


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 387 WRVHFYQIRQLRVEFSXGLFPFHELDKFFVDHV 289
           WR+  Y I QL   F  GL   H  D FF D +
Sbjct: 401 WRMRRYLIIQLIRVFLSGLSTVHFQDFFFADQM 433


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +1

Query: 247 NELPKKIKSRGKDAHMIHEELVQLMKWKQAXGKFYPQLSYLIKVNTPRAVMQETKKAFRK 426
           +ELP+ I  +G +     E+L  L    QA  + Y    +  + +      ++  K F+K
Sbjct: 3   SELPEVI-FKGTE---FEEQLSNLTSDSQANKRVYEDYDFKDETSAKPIPTEKKLKVFKK 58

Query: 427 LPNIESAMTAL 459
             N+E+ ++AL
Sbjct: 59  DDNVETLLSAL 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,550
Number of Sequences: 5004
Number of extensions: 42143
Number of successful extensions: 88
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)