Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D19
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0995 - 29545058-29545204,29545988-29546074,29546166-295463...    71   6e-13
12_02_0683 + 22006770-22006935,22007030-22007274,22007524-220077...    28   5.9  
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     28   5.9  
04_01_0597 + 7856610-7856936                                           28   5.9  
03_06_0343 + 33274329-33274981,33275197-33276121                       28   5.9  
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     28   5.9  

>03_05_0995 -
           29545058-29545204,29545988-29546074,29546166-29546361,
           29546686-29546915
          Length = 219

 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 44/146 (30%), Positives = 75/146 (51%)
 Frame = +1

Query: 121 FLEANAKEFDSVLKLYPQAIKLKAERKTKRPXELIKLDNWYQNELPKKIKSRGKDAHMIH 300
           F   +A E+ + L  Y +  +L A  K     +L+++D++Y+ +LP  ++ R  +  +  
Sbjct: 7   FASGDAAEWRAALAAYDR--RLAALGKP----DLVEVDSFYRRDLPDLLRRRDPEPFLAK 60

Query: 301 EELVQLMKWKQAXGKFYPQLSYLIKVNTPRAVMQETKKAFRKLPNIESAMTALSNLKGVG 480
            ELV+L++WK + GK+ P+L   +K      V   + KAF  LP++  A+T L+ LKGVG
Sbjct: 61  PELVRLLQWKLSRGKWRPRLMDFVKGLEDAVVESASCKAFAALPDLRKAITELTVLKGVG 120

Query: 481 XXXXXXXXXXXXXXXXXFMADECVQA 558
                            FM+DE + A
Sbjct: 121 PATASAVLAAYAPDVAPFMSDEAMVA 146


>12_02_0683 +
           22006770-22006935,22007030-22007274,22007524-22007727,
           22007847-22007939,22008015-22008107,22008196-22008537,
           22008675-22008737,22008812-22008892
          Length = 428

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 408 EKGLPQTAQYRIRDDRSKQSQRRGNGHSISVISCR 512
           E+G+ +T + R+R  R  Q     N  +IS++ CR
Sbjct: 393 EEGVVRTNRKRVRCSRPDQDDSMSNQRNISMVFCR 427


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +1

Query: 88  QLATAKDTSTFFLEANAKEFDSVLKLYPQAIKLKAERKTKRPXELIKLDNWYQNELPKKI 267
           Q +  KD +        K+ ++  KLY +++  K  RK  +  +    DN+Y+ +L K  
Sbjct: 60  QPSGVKDAAVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPA 119

Query: 268 KSR 276
            +R
Sbjct: 120 LAR 122


>04_01_0597 + 7856610-7856936
          Length = 108

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +3

Query: 384 ATSCDARDEKGL-PQTAQYRIRD--DRSKQSQRRGNGHSISVISCR*SXNSTVYG*RMRP 554
           A    AR +K L PQ  ++R  +  D  +Q++ RG+G      S R     +V     RP
Sbjct: 33  ALQASARKKKALEPQARRWRTAEGADEPQQAKARGSGRKAMASSKRGKGQRSVGADAQRP 92

Query: 555 GD 560
           G+
Sbjct: 93  GE 94


>03_06_0343 + 33274329-33274981,33275197-33276121
          Length = 525

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 318 HEMETGXRKILPAV--VVSDKSEHATSCDARDEKG 416
           HEM     ++LP V  V +D  EH T+ + RD+ G
Sbjct: 460 HEMFAAVERLLPEVDLVPADVGEHLTAKNPRDDAG 494


>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +1

Query: 88  QLATAKDTSTFFLEANAKEFDSVLKLYPQAIKLKAERKTKRPXELIKLDNWYQNELPKKI 267
           Q +  KD +        K+ ++  KLY +++  K  RK  +  +    DN+Y+ +L K  
Sbjct: 60  QPSGGKDAAVVLSTTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPA 119

Query: 268 KSR 276
            +R
Sbjct: 120 LAR 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,794,166
Number of Sequences: 37544
Number of extensions: 281397
Number of successful extensions: 605
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)