Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D19
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   9e-21
SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)                    29   2.6  
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)                    29   3.4  
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)               28   4.5  
SB_50352| Best HMM Match : BBE (HMM E-Value=0.72)                      28   4.5  

>SB_38771| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 1/120 (0%)
 Frame = +1

Query: 124 LEANAKEFDSVLKLYPQAIKLKAERKTKRPXE-LIKLDNWYQNELPKKIKSRGKDAHMIH 300
           L+A+A  +  VL LY   +K  A+ K K   E L++LDNW+Q ELP  I SR ++ ++  
Sbjct: 5   LDASAVRWHEVLDLYGVVVKEMAKGKKKDKAEQLLELDNWFQQELPVSISSR-EEKYLTK 63

Query: 301 EELVQLMKWKQAXGKFYPQLSYLIKVNTPRAVMQETKKAFRKLPNIESAMTALSNLKGVG 480
           +EL +LM WK + GKF P+L  LIK N+   +   TKKAF+ LP++  A+  LS L GVG
Sbjct: 64  DELTKLMTWKLSRGKFRPRLVDLIKSNSDDKIDTLTKKAFKLLPDVIQAIKVLSELNGVG 123


>SB_56680| Best HMM Match : PTR2 (HMM E-Value=3e-06)
          Length = 606

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 23/65 (35%), Positives = 31/65 (47%)
 Frame = -1

Query: 479 PTPLRLLRAVIADSILGSLRKAFFVSCITARGVFTFIRYDNCG*NFPXACFHFMSWTSSS 300
           P  LR+ R  IA  IL  + + F    IT   V  F+  DN G +   A    + +TS +
Sbjct: 48  PRKLRMRRLPIACLILAEVCERFAYYGITINFVL-FL--DNFGWSMFAAAGGVLVYTSVA 104

Query: 299 WIMCA 285
           W MCA
Sbjct: 105 WFMCA 109


>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
          Length = 843

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +1

Query: 187 KAERKTKRPXELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMKWKQAXGKFYPQLSY 366
           +AE + +R  E  KL    +    K IK+RG    MI E   + +  K    ++Y +L  
Sbjct: 573 EAEERERRALE--KLQASVERHGDKYIKARGDVQRMIEEVKQETIIVKDVARRYYRELRA 630

Query: 367 LIKVNTPRAVMQE-TKKAFRKLPNIESAMTALSNL 468
            I     + +MQE +K++  KL ++   ++ + ++
Sbjct: 631 AID-EGEKVLMQEISKRSDAKLKSLNEQVSQMIDI 664


>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
          Length = 865

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 366 SDKSEHATSCDARDEKGLPQTAQYRIRDDRSKQSQRRGNGH 488
           S K EH +   +RD+K  P++   R R  R  +SQ RG  +
Sbjct: 150 SRKREHRSRSKSRDKKPKPESPS-RGRSSRRSRSQERGTSN 189


>SB_50352| Best HMM Match : BBE (HMM E-Value=0.72)
          Length = 344

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +1

Query: 205 KRPXELIKLDNWYQNELPKKIKSRGKDAHMIHEELVQLMKWKQAXGKFYPQLSYLIKVN- 381
           +R  E++K D+  +N    KI    K   ++HE  +  +       +FY ++   +K + 
Sbjct: 214 RRRLEILKEDSVPKNTEKTKILGDKKVHRVLHEANISSLDLGGILRRFYAEVKTKVKKDL 273

Query: 382 TPRAVMQETKKAF 420
           +PR VM   K+ +
Sbjct: 274 SPRTVMIANKEVY 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,863,021
Number of Sequences: 59808
Number of extensions: 326946
Number of successful extensions: 801
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)