Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D18
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865           97   1e-20
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297           97   1e-20
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750           92   4e-19
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222...    35   0.049
08_02_0681 + 20013975-20014298,20014391-20014594,20014790-20014828     27   9.8  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    27   9.8  

>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
          Length = 131

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 51/130 (39%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
 Frame = +2

Query: 92  MSWQDYVDKQLMASX---CVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFXNESLL 259
           MSWQ YVD+ LM       +T AAI GHDG VWA+S  F +   +E+  I+  F     L
Sbjct: 1   MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60

Query: 260 TXGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMXTQQAVVISLYEEPIQPQQAASVVX 436
              G+ +  T+Y+ + G    +IR K G  G+    T QA+V+ +Y+EP+ P Q   VV 
Sbjct: 61  APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120

Query: 437 KLGQYLITCG 466
           +LG YL+  G
Sbjct: 121 RLGDYLVEQG 130


>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
          Length = 131

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 51/130 (39%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
 Frame = +2

Query: 92  MSWQDYVDKQLMASX---CVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFXNESLL 259
           MSWQ YVD+ LM       +T AAI GHDG VWA+S  F +   +E+  I+  F     L
Sbjct: 1   MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60

Query: 260 TXGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMXTQQAVVISLYEEPIQPQQAASVVX 436
              G+ +  T+Y+ + G    +IR K G  G+    T QA+V+ +Y+EP+ P Q   VV 
Sbjct: 61  APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120

Query: 437 KLGQYLITCG 466
           +LG YL+  G
Sbjct: 121 RLGDYLVEQG 130


>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
          Length = 131

 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 5/130 (3%)
 Frame = +2

Query: 92  MSWQDYVDKQLMASXC---VTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFXNESLL 259
           MSWQ YVD  LM       +T AAI GHDG+VWA+S  F +   +E+  I+  F     L
Sbjct: 1   MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60

Query: 260 TXGGVTIAGTRYIYLSGTDHI-IRAKLGKVGVHCMXTQQAVVISLYEEPIQPQQAASVVX 436
              G+ + GT+Y+ + G   + IR K G  G+    T  ++++ +Y+EP+ P Q   +V 
Sbjct: 61  APTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVE 120

Query: 437 KLGQYLITCG 466
           +LG YLI  G
Sbjct: 121 RLGDYLIEQG 130


>12_02_0932 +
           24519204-24519380,24520074-24520128,24520251-24522202,
           24522288-24522446,24522878-24523049,24523131-24523429,
           24524037-24524285
          Length = 1020

 Score = 35.1 bits (77), Expect = 0.049
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 185 KSEGFEISKDEVAKIVAGFXNESLLTXGGVT 277
           K+ GF+I  DE+  IV G  ++ L+T GGVT
Sbjct: 92  KAAGFQICADELGSIVEGHDSKKLITHGGVT 122


>08_02_0681 + 20013975-20014298,20014391-20014594,20014790-20014828
          Length = 188

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +2

Query: 335 LGKVGVHCMXTQQAVVISLYEEPIQPQQAASVVXKLGQYLITCGYYXSKLAVI 493
           LG+V +  + +    V+ L  + + P++  S+  K+G  L   G + + + V+
Sbjct: 126 LGRVVLFALFSVCFAVVGLLLQELAPEEKGSIQEKVGSVLADIGLFANSVMVV 178


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 311 CH*GRCTACPLSSRR 267
           CH G+C  CPL  RR
Sbjct: 324 CHAGKCGGCPLQGRR 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,092,374
Number of Sequences: 37544
Number of extensions: 305406
Number of successful extensions: 624
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)