Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D18
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   1e-08
SB_20951| Best HMM Match : Pentaxin (HMM E-Value=9.1e-17)              29   3.3  
SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)                29   4.3  
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)                  28   7.6  

>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 41/114 (35%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
 Frame = +2

Query: 140 VTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFXNESLLTXGGVTIAGTRYIYLSGTDH 319
           V +AAI G DG+ WA S GF +S+ E  +++    + S+      TI G +Y+ L     
Sbjct: 7   VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV---SAKTIGGAKYMMLRNDQE 63

Query: 320 --IIRAKLGKVGVHCM-XTQQAVVISLYEEPI-QPQQAASVVXKLGQYLITCGY 469
             I   KL   G  C+  T+QA+VI  YEE         +VV +L QYL   GY
Sbjct: 64  SKICYLKLKDKGGFCVCLTKQALVIGGYEESAGGAGNCNNVVEQLAQYLKESGY 117


>SB_20951| Best HMM Match : Pentaxin (HMM E-Value=9.1e-17)
          Length = 179

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
 Frame = +2

Query: 104 DYVDKQLMASXCVTKAAIAGHDGN------VWAKSEG-FEISKD-EVAKIVAGFXNESLL 259
           DY D  +  +   T+  IA +DG        W  + G + + KD  VAK   G      +
Sbjct: 37  DYRDVVIYIAQNTTRTGIAVNDGQWHHLCVTWENTAGSWRLYKDGRVAKSGTGLSQGEQI 96

Query: 260 TXGGVTIAGTRYIYLSGTDHIIRAKLGKV 346
             GG  + G     L G  H  ++ +G++
Sbjct: 97  DGGGAVVLGNEQDMLGGGFHQTQSFIGEM 125


>SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)
          Length = 697

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 164 HDGNVWAKSEGF-EISKDEVAKIV-AGFXNESLLTXGGVTIAGTRYIYLSG 310
           H G  W  ++G  EI  D + ++   GF     L  GG  + G  Y  L+G
Sbjct: 380 HYGITWRSNDGHVEIHADGILRLSQTGFATGHTLPAGGTMVLGQSYRVLNG 430


>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
          Length = 404

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/76 (18%), Positives = 30/76 (39%)
 Frame = +2

Query: 218 VAKIVAGFXNESLLTXGGVTIAGTRYIYLSGTDHIIRAKLGKVGVHCMXTQQAVVISLYE 397
           ++ +V  F + +     G+      Y  +      +  K  K G+  + T   ++++LY 
Sbjct: 1   MSSLVGAFGDSARTRMEGLKFEDVLYECVRADKFSVYGKHDKTGIVAIKTATLILVALYS 60

Query: 398 EPIQPQQAASVVXKLG 445
           + + P        KLG
Sbjct: 61  QEMSPSICVEASEKLG 76


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,958,072
Number of Sequences: 59808
Number of extensions: 363924
Number of successful extensions: 838
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)