Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D18
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to p...    96   2e-20
At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to S...    93   1e-19
At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to p...    91   4e-19
At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identic...    88   5e-18
At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / aller...    85   3e-17
At5g02120.1 68418.m00133 thylakoid membrane one helix protein (O...    30   1.5  
At1g62420.1 68414.m07042 expressed protein contains Pfam profile...    29   2.0  

>At2g19770.1 68415.m02310 profilin 4 (PRO4) (PFN4) identical to
           profilin 4 SP:Q38905 GI:1353768 from [Arabidopsis
           thaliana]
          Length = 134

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 54/133 (40%), Positives = 73/133 (54%), Gaps = 8/133 (6%)
 Frame = +2

Query: 92  MSWQDYVDKQLMASXC------VTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFXNE 250
           MSWQ YVD+ LM          +T AAI GHDG+VWA+S  F +    E+  I+  F   
Sbjct: 1   MSWQAYVDEHLMCDVGDGQGHHLTAAAIIGHDGSVWAQSANFPQFKPQEITDIMKDFDEP 60

Query: 251 SLLTXGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMXTQQAVVISLYEEPIQPQQAAS 427
             L   G+ +AG +Y+ + G  + +IR K G  G+    T Q++V  LYEEP+ P Q   
Sbjct: 61  GHLAPTGMFLAGLKYMVIQGEPNAVIRGKKGAGGITIKKTGQSMVFGLYEEPVTPGQCNM 120

Query: 428 VVXKLGQYLITCG 466
           VV +LG YLI  G
Sbjct: 121 VVERLGDYLIEQG 133


>At5g56600.1 68418.m07065 profilin 5 (PRO5) (PRF3) identical to
           SP|Q9FE63 Profilin 5 {Arabidopsis thaliana}
          Length = 168

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 52/130 (40%), Positives = 71/130 (54%), Gaps = 5/130 (3%)
 Frame = +2

Query: 92  MSWQDYVDKQLM---ASXCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFXNESLL 259
           MSWQ YVD  LM   A   +T AAI G DG+VWA+S  F ++  +E+  I   F     L
Sbjct: 38  MSWQTYVDDHLMCDVAGNRLTAAAILGQDGSVWAQSNNFPQVKPEEIQGIKDDFTTPGTL 97

Query: 260 TXGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMXTQQAVVISLYEEPIQPQQAASVVX 436
              G+ + G +Y+ + G  + +IR K G  GV    T  A+V  +Y+EP+ P Q   VV 
Sbjct: 98  APTGLFLGGNKYMVIQGEPNAVIRGKKGAGGVTIKKTTLALVFGIYDEPMTPGQCNMVVE 157

Query: 437 KLGQYLITCG 466
            LG+YLI  G
Sbjct: 158 NLGEYLIESG 167


>At4g29340.1 68417.m04192 profilin 3 (PRO3) (PFN3) identical to
           profilin 3 SP:Q38904 GI:1353765 from [Arabidopsis
           thaliana]
          Length = 134

 Score = 91.5 bits (217), Expect = 4e-19
 Identities = 52/133 (39%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
 Frame = +2

Query: 92  MSWQDYVDKQLMASXC------VTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFXNE 250
           MSWQ YVD+ LM          +T AAI GHDG+VWA+S  F +    E + I+  F   
Sbjct: 1   MSWQTYVDEHLMCDVGDGQGHHLTAAAIVGHDGSVWAQSANFPQFKGQEFSDIMKDFDEP 60

Query: 251 SLLTXGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMXTQQAVVISLYEEPIQPQQAAS 427
             L   G+ +AG +Y+ + G    +IR K G  G+    T Q+ V  +YEEP+ P Q   
Sbjct: 61  GHLAPTGLFMAGAKYMVIQGEPGAVIRGKKGAGGITIKKTGQSCVFGIYEEPVTPGQCNM 120

Query: 428 VVXKLGQYLITCG 466
           VV +LG YL+  G
Sbjct: 121 VVERLGDYLLEQG 133


>At4g29350.1 68417.m04193 profilin 2 (PRO2) (PFN2) (PRF2) identical
           to profilin 2 SP:Q42418 GI:1353772 from [Arabidopsis
           thaliana]; identical to cDNA profilin (PRF2) GI:9965570
          Length = 131

 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 52/130 (40%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
 Frame = +2

Query: 92  MSWQDYVDKQLMASX---CVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFXNESLL 259
           MSWQ YVD  LM       +T AAI G DG+VWA+S  F ++   E+A I   F     L
Sbjct: 1   MSWQSYVDDHLMCEVEGNHLTHAAIFGQDGSVWAQSSAFPQLKPAEIAGINKDFEEAGHL 60

Query: 260 TXGGVTIAGTRYIYLSG-TDHIIRAKLGKVGVHCMXTQQAVVISLYEEPIQPQQAASVVX 436
              G+ + G +Y+ + G    +IR K G  GV    T QA+V  +Y+EP+   Q   VV 
Sbjct: 61  APTGLFLGGEKYMVVQGEAGAVIRGKKGPGGVTIKKTTQALVFGIYDEPMTGGQCNLVVE 120

Query: 437 KLGQYLITCG 466
           +LG YLI  G
Sbjct: 121 RLGDYLIESG 130


>At2g19760.1 68415.m02309 profilin 1 (PRO1) (PFN1) (PRF1) / allergen
           Ara t 8 identical to profilin 1 (Allergen Ara t 8)
           SP:Q42449 GI:1353770 from [Arabidopsis thaliana]
          Length = 131

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 50/127 (39%), Positives = 66/127 (51%), Gaps = 5/127 (3%)
 Frame = +2

Query: 92  MSWQDYVDKQLMASX---CVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFXNESLL 259
           MSWQ YVD  LM       +T AAI G DG+VWA+S  F ++   E+  I   F     L
Sbjct: 1   MSWQSYVDDHLMCDVEGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFL 60

Query: 260 TXGGVTIAGTRYIYLSGTDH-IIRAKLGKVGVHCMXTQQAVVISLYEEPIQPQQAASVVX 436
              G+ + G +Y+ + G    +IR K G  GV    T QA+V   Y+EP+   Q   VV 
Sbjct: 61  APTGLFLGGEKYMVIQGEQGAVIRGKKGPGGVTIKKTNQALVFGFYDEPMTGGQCNLVVE 120

Query: 437 KLGQYLI 457
           +LG YLI
Sbjct: 121 RLGDYLI 127


>At5g02120.1 68418.m00133 thylakoid membrane one helix protein (OHP)
           identical to one helix protein GI:3283057 from
           [Arabidopsis thaliana]
          Length = 110

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = -2

Query: 227 SSPLHLLKFRSLPTLPTHCHHDRQ 156
           SSPL    F  L TL THCH  RQ
Sbjct: 3   SSPLSSSLFHPLSTLSTHCHGRRQ 26


>At1g62420.1 68414.m07042 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 465

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +1

Query: 250 ITANXWRRDDSGHAVHLPQWHRPYHPREAWQGRRALHEXTASCGHFSL*RTHPTSAGRIC 429
           I  +  RR      +H+P W R  + +  W G    ++ T++  ++ +  T+ T+A + C
Sbjct: 199 IMCHEMRRSMKHVGIHVPPWRRNGYMQAKWFG---FYKRTSTTNNYEMVNTYDTTAFKGC 255

Query: 430 R 432
           +
Sbjct: 256 K 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,765,274
Number of Sequences: 28952
Number of extensions: 236774
Number of successful extensions: 483
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)