Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_D17
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 132 4e-32
SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 132 4e-32
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 29 0.40
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 3.7
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 4.9
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 25 6.4
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 8.5
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 8.5
>SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein
L20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 132 bits (319), Expect = 4e-32
Identities = 70/153 (45%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Frame = +1
Query: 106 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESR 285
++MR+F+P+ VAKSR+WYFL+ + K KK TG FGIW+RY+SR
Sbjct: 24 FRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSR 83
Query: 286 SGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIK-VEVIXAAACRRPQVKQFH 462
SG HNMY+E+RD + GAV Y DM A HRAR SI+I+K VEV RR VKQ
Sbjct: 84 SGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLL 143
Query: 463 NSTIRFPLPKR---VHHYKRLNTFAYKRPXTYF 552
N ++FPLP R V FA RP T++
Sbjct: 144 NPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176
Score = 35.5 bits (78), Expect = 0.006
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +3
Query: 42 LREYEVIGRKLPSENEPKPPL 104
L+EY+V+GRK+P+E+EP P L
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKL 23
>SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal
protein L20a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 132 bits (319), Expect = 4e-32
Identities = 70/153 (45%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Frame = +1
Query: 106 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESR 285
++MR+F+P+ VAKSR+WYFL+ + K KK TG FGIW+RY+SR
Sbjct: 24 FRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSR 83
Query: 286 SGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIK-VEVIXAAACRRPQVKQFH 462
SG HNMY+E+RD + GAV Y DM A HRAR SI+I+K VEV RR VKQ
Sbjct: 84 SGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLL 143
Query: 463 NSTIRFPLPKR---VHHYKRLNTFAYKRPXTYF 552
N ++FPLP R V FA RP T++
Sbjct: 144 NPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176
Score = 35.5 bits (78), Expect = 0.006
Identities = 13/21 (61%), Positives = 19/21 (90%)
Frame = +3
Query: 42 LREYEVIGRKLPSENEPKPPL 104
L+EY+V+GRK+P+E+EP P L
Sbjct: 3 LKEYQVVGRKVPTEHEPVPKL 23
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 29.5 bits (63), Expect = 0.40
Identities = 19/71 (26%), Positives = 29/71 (40%)
Frame = +3
Query: 303 VP*IP*PECXWSCHSVLQRYGSXTQSPSSFNTDYQSGSNQXCCVSPSTGQTVPQQHHQIP 482
+P P P + +VLQ++ SS + SNQ +SPST + HH
Sbjct: 68 LPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSS 127
Query: 483 IAQTCAPLQET 515
+ +P T
Sbjct: 128 SSYAVSPTSPT 138
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +2
Query: 122 SLRIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFXRK 235
S ++ P++V S D+ + SRRP + S RKF K
Sbjct: 295 SPKVSKRPSIVRQDSHDSNKLSRRPTINTSFDRKFSPK 332
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 163 NTRNEIWRQLDPERKFSFYSKGGLGSFSDGSLRPITSYS 47
+T + PE + + +G LG F D S+R S S
Sbjct: 139 DTMKDAETSASPEATIAVFGRGKLGGFDDQSIRKAKSNS 177
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 130 DPIVAKSRFWYFLRQLKKFK 189
D ++ RFWY+L + K F+
Sbjct: 476 DRLIVTFRFWYYLMKAKSFQ 495
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 201 TSGLLELLKLSQEIPETRFGDNWIRRENSH 112
TSG L LL E PE+ G+ + R + H
Sbjct: 1274 TSGNLRLLAYDPENPESHSGERLVTRGDFH 1303
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -1
Query: 483 WESDGAVVELFDLWTATRSSXDY 415
WE G V+ + W A S DY
Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,241
Number of Sequences: 5004
Number of extensions: 45961
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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