BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_D17 (603 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Sc... 132 4e-32 SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosom... 132 4e-32 SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 29 0.40 SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 3.7 SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 26 4.9 SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 25 6.4 SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 8.5 SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 8.5 >SPAC26A3.04 |rpl2002|rpl20, rpl20-2|60S ribosomal protein L20|Schizosaccharomyces pombe|chr 1|||Manual Length = 176 Score = 132 bits (319), Expect = 4e-32 Identities = 70/153 (45%), Positives = 89/153 (58%), Gaps = 4/153 (2%) Frame = +1 Query: 106 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESR 285 ++MR+F+P+ VAKSR+WYFL+ + K KK TG FGIW+RY+SR Sbjct: 24 FRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSR 83 Query: 286 SGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIK-VEVIXAAACRRPQVKQFH 462 SG HNMY+E+RD + GAV Y DM A HRAR SI+I+K VEV RR VKQ Sbjct: 84 SGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLL 143 Query: 463 NSTIRFPLPKR---VHHYKRLNTFAYKRPXTYF 552 N ++FPLP R V FA RP T++ Sbjct: 144 NPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176 Score = 35.5 bits (78), Expect = 0.006 Identities = 13/21 (61%), Positives = 19/21 (90%) Frame = +3 Query: 42 LREYEVIGRKLPSENEPKPPL 104 L+EY+V+GRK+P+E+EP P L Sbjct: 3 LKEYQVVGRKVPTEHEPVPKL 23 >SPAC3A12.10 |rpl2001|rpl20-1, rpl20, yl17b, rpl18a-2|60S ribosomal protein L20a|Schizosaccharomyces pombe|chr 1|||Manual Length = 176 Score = 132 bits (319), Expect = 4e-32 Identities = 70/153 (45%), Positives = 89/153 (58%), Gaps = 4/153 (2%) Frame = +1 Query: 106 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESR 285 ++MR+F+P+ VAKSR+WYFL+ + K KK TG FGIW+RY+SR Sbjct: 24 FRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEISEPKPLKAKVFGIWIRYDSR 83 Query: 286 SGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIK-VEVIXAAACRRPQVKQFH 462 SG HNMY+E+RD + GAV Y DM A HRAR SI+I+K VEV RR VKQ Sbjct: 84 SGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILKVVEVEKKEDVRRNYVKQLL 143 Query: 463 NSTIRFPLPKR---VHHYKRLNTFAYKRPXTYF 552 N ++FPLP R V FA RP T++ Sbjct: 144 NPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTFY 176 Score = 35.5 bits (78), Expect = 0.006 Identities = 13/21 (61%), Positives = 19/21 (90%) Frame = +3 Query: 42 LREYEVIGRKLPSENEPKPPL 104 L+EY+V+GRK+P+E+EP P L Sbjct: 3 LKEYQVVGRKVPTEHEPVPKL 23 >SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Schizosaccharomyces pombe|chr 1|||Manual Length = 515 Score = 29.5 bits (63), Expect = 0.40 Identities = 19/71 (26%), Positives = 29/71 (40%) Frame = +3 Query: 303 VP*IP*PECXWSCHSVLQRYGSXTQSPSSFNTDYQSGSNQXCCVSPSTGQTVPQQHHQIP 482 +P P P + +VLQ++ SS + SNQ +SPST + HH Sbjct: 68 LPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQHHHHHSSS 127 Query: 483 IAQTCAPLQET 515 + +P T Sbjct: 128 SSYAVSPTSPT 138 >SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein 3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual Length = 1385 Score = 26.2 bits (55), Expect = 3.7 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +2 Query: 122 SLRIQLSPNLVSGIS*DNLRSSRRPLVKLSLLRKFXRK 235 S ++ P++V S D+ + SRRP + S RKF K Sbjct: 295 SPKVSKRPSIVRQDSHDSNKLSRRPTINTSFDRKFSPK 332 >SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosaccharomyces pombe|chr 3|||Manual Length = 662 Score = 25.8 bits (54), Expect = 4.9 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = -3 Query: 163 NTRNEIWRQLDPERKFSFYSKGGLGSFSDGSLRPITSYS 47 +T + PE + + +G LG F D S+R S S Sbjct: 139 DTMKDAETSASPEATIAVFGRGKLGGFDDQSIRKAKSNS 177 >SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharomyces pombe|chr 2|||Manual Length = 840 Score = 25.4 bits (53), Expect = 6.4 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = +1 Query: 130 DPIVAKSRFWYFLRQLKKFK 189 D ++ RFWY+L + K F+ Sbjct: 476 DRLIVTFRFWYYLMKAKSFQ 495 >SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1441 Score = 25.0 bits (52), Expect = 8.5 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -1 Query: 201 TSGLLELLKLSQEIPETRFGDNWIRRENSH 112 TSG L LL E PE+ G+ + R + H Sbjct: 1274 TSGNLRLLAYDPENPESHSGERLVTRGDFH 1303 >SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 409 Score = 25.0 bits (52), Expect = 8.5 Identities = 9/23 (39%), Positives = 11/23 (47%) Frame = -1 Query: 483 WESDGAVVELFDLWTATRSSXDY 415 WE G V+ + W A S DY Sbjct: 145 WEKLGVTVDTYPYWDAKNRSFDY 167 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,412,241 Number of Sequences: 5004 Number of extensions: 45961 Number of successful extensions: 137 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 133 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 264253462 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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