Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_D17
(603 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 139 2e-33
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 136 1e-32
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 117 6e-27
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255 30 1.2
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 30 1.6
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 28 6.5
02_01_0317 - 2128660-2128776,2129281-2129364,2129463-2129543,213... 28 6.5
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 27 8.7
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 139 bits (336), Expect = 2e-33
Identities = 62/130 (47%), Positives = 83/130 (63%)
Frame = +1
Query: 106 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESR 285
Y+M++++ + + AKS+FWYFLR+LKK KK+ G N+GIWLRY+SR
Sbjct: 27 YRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSR 86
Query: 286 SGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIKVEVIXAAACRRPQVKQFHN 465
+G HNMY+EYRD ++ GAV Q Y +M + HR R IQIIK + C+R KQFHN
Sbjct: 87 TGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHN 146
Query: 466 STIRFPLPKR 495
S I+FPL R
Sbjct: 147 SNIKFPLVYR 156
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 136 bits (329), Expect = 1e-32
Identities = 61/130 (46%), Positives = 82/130 (63%)
Frame = +1
Query: 106 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESR 285
Y+M++++ + + AKS+FWYFLR+LKK KK+ G N+GIWLRY+SR
Sbjct: 27 YRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIWLRYQSR 86
Query: 286 SGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIKVEVIXAAACRRPQVKQFHN 465
+G HNMY+EYRD ++ GAV Q Y +M + HR R IQIIK + C+R KQFH
Sbjct: 87 TGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHK 146
Query: 466 STIRFPLPKR 495
S I+FPL R
Sbjct: 147 SDIKFPLVYR 156
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 117 bits (282), Expect = 6e-27
Identities = 54/112 (48%), Positives = 68/112 (60%)
Frame = +1
Query: 160 YFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVXGA 339
YFLR+LKK KK+ G N+GIWLRY+SR+G HNMY+EYRD ++ GA
Sbjct: 62 YFLRKLKKVKKSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGA 121
Query: 340 VTQCYRDMGAXHRARAHSIQIIKVEVIXAAACRRPQVKQFHNSTIRFPLPKR 495
V Q Y +M + HR R IQIIK + C+R KQFHN +I+FPL R
Sbjct: 122 VEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYR 173
>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
Length = 965
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 449 SNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLXLTSCNCNVRHITIKPM*KW 601
S++ TT+ S P++C+ D R R +S C H T +PM +W
Sbjct: 410 SSAMTTSAMQSRSPSLCSACLDGY-ERERADMASSPGCGALHATEQPMSQW 459
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +3
Query: 375 QSPSSFNTDYQSGSNQXCCVSPSTGQTVPQQHHQIPIAQTCAPLQET 515
Q P S T+YQ SN + Q + HHQ+PI + + T
Sbjct: 950 QCPQSTETNYQRCSNGETESNQPVSQNELEDHHQVPITASSSTNNST 996
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 460 HNSTIRFPLPKRVHHYKRLNTFAY 531
H+ +R PLP +HH TFAY
Sbjct: 221 HDPEVRDPLPLTIHHLPIAVTFAY 244
>02_01_0317 -
2128660-2128776,2129281-2129364,2129463-2129543,
2130230-2130407,2130530-2130673,2130780-2130826,
2131149-2131205,2131989-2132087,2132301-2132423,
2132514-2132636,2132859-2132972,2133612-2133800,
2134408-2134574,2134707-2134791,2134891-2135085,
2135162-2135251,2135418-2135603,2135885-2135959,
2136757-2136957
Length = 784
Score = 27.9 bits (59), Expect = 6.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 144 GDNWIRRENSHFIAREVWARSP 79
GD W+R +N H + R+VW P
Sbjct: 11 GDPWLRTKNGH-VGRQVWEFDP 31
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 438 PSTGQTVPQQHHQIPIAQTCAP 503
P+ QT P+QH Q+PI T P
Sbjct: 425 PNQQQTKPEQHPQLPIGATKQP 446
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,666,882
Number of Sequences: 37544
Number of extensions: 302748
Number of successful extensions: 864
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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