Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D17
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)             167   6e-42
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     29   2.9  
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)                    29   3.8  
SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)                 28   6.7  
SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05)                    27   8.8  

>SB_19131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score =  167 bits (406), Expect = 6e-42
 Identities = 76/121 (62%), Positives = 88/121 (72%)
 Frame = +1

Query: 100 PCYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYE 279
           P YKMRIF+PD +VA+S+FWYF+ QLK+ KK+ G                 NFGIWLRY+
Sbjct: 226 PLYKMRIFAPDDVVARSKFWYFISQLKRMKKSQGEIVSCQQIYEKKPLQIKNFGIWLRYD 285

Query: 280 SRSGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIKVEVIXAAACRRPQVKQF 459
           SRSG HNMYREYRDL+V GAVT CYRDM A HRAR +SIQI+KVEVI A+  RRP VKQ 
Sbjct: 286 SRSGTHNMYREYRDLTVSGAVTACYRDMAARHRARGYSIQIMKVEVIPASKARRPHVKQM 345

Query: 460 H 462
           H
Sbjct: 346 H 346


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 342 HSVLQRYGSXTQSPSSFNTDYQSGSNQXCCVSPSTGQTVPQQHHQIP 482
           H + Q+     QSPS+ N    +             Q  PQQHHQ+P
Sbjct: 302 HHLPQQQPQQLQSPSNHNAQPMTTQAAAFFQQVPEQQQSPQQHHQLP 348


>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
          Length = 1931

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 494 VCTTTRDLIPSRTRGLXLTSCNCNVRHITIKPM*KW 601
           +C T    I SRTRGL  ++CN  V  + + P  KW
Sbjct: 820 LCDTCAFNITSRTRGLCPSTCNKTV-SVRVDPSGKW 854


>SB_49314| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-30)
          Length = 300

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 391 SIQIIKVEVIXAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNT 522
           S++I    ++   AC  P V   HN  +R  + + VHH KR+ T
Sbjct: 246 SLEITCFFLLHVNACCNPVVYSLHNPKLRKCMNRLVHH-KRVRT 288


>SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05)
          Length = 1433

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -3

Query: 154  NEIWRQLDPERKFSFYSKGGLGSFSDGSL--RPITSYSLNCPL 32
            +E+WR    E      ++ GLG    GSL   P T+ SL C L
Sbjct: 971  SEVWRVAPQEAWVRVATRSGLGPKKSGSLAKEPSTAPSLPCDL 1013


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,258,717
Number of Sequences: 59808
Number of extensions: 358694
Number of successful extensions: 979
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)