BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_D17 (603 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a pr... 206 6e-53 BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a ... 206 6e-53 BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a ... 206 6e-53 BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a ... 206 6e-53 AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a ... 206 6e-53 AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a ... 206 6e-53 AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein L18a-... 155 9e-38 X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA ... 155 1e-37 AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a ... 91 2e-18 >L05093-1|AAC18781.1| 176|Homo sapiens ribosomal protein L18a protein. Length = 176 Score = 206 bits (502), Expect = 6e-53 Identities = 95/151 (62%), Positives = 110/151 (72%) Frame = +1 Query: 100 PCYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYE 279 P Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++G NFGIWLRY+ Sbjct: 26 PLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYD 85 Query: 280 SRSGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIKVEVIXAAACRRPQVKQF 459 SRSG HNMYREYRDL+ GAVTQCYRDMGA HRARAHSIQI+KVE I A+ CRRP VKQF Sbjct: 86 SRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQF 145 Query: 460 HNSTIRFPLPKRVHHYKRLNTFAYKRPXTYF 552 H+S I+FPLP RV + F KRP T+F Sbjct: 146 HDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176 Score = 35.5 bits (78), Expect = 0.14 Identities = 16/27 (59%), Positives = 19/27 (70%) Frame = +3 Query: 24 MKAKGQLREYEVIGRKLPSENEPKPPL 104 MKA G LREY+V+GR LP+ PPL Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPL 27 >BC071920-1|AAH71920.1| 176|Homo sapiens ribosomal protein L18a protein. Length = 176 Score = 206 bits (502), Expect = 6e-53 Identities = 95/151 (62%), Positives = 110/151 (72%) Frame = +1 Query: 100 PCYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYE 279 P Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++G NFGIWLRY+ Sbjct: 26 PLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYD 85 Query: 280 SRSGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIKVEVIXAAACRRPQVKQF 459 SRSG HNMYREYRDL+ GAVTQCYRDMGA HRARAHSIQI+KVE I A+ CRRP VKQF Sbjct: 86 SRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQF 145 Query: 460 HNSTIRFPLPKRVHHYKRLNTFAYKRPXTYF 552 H+S I+FPLP RV + F KRP T+F Sbjct: 146 HDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176 Score = 35.5 bits (78), Expect = 0.14 Identities = 16/27 (59%), Positives = 19/27 (70%) Frame = +3 Query: 24 MKAKGQLREYEVIGRKLPSENEPKPPL 104 MKA G LREY+V+GR LP+ PPL Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPL 27 >BC066319-1|AAH66319.1| 176|Homo sapiens ribosomal protein L18a protein. Length = 176 Score = 206 bits (502), Expect = 6e-53 Identities = 95/151 (62%), Positives = 110/151 (72%) Frame = +1 Query: 100 PCYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYE 279 P Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++G NFGIWLRY+ Sbjct: 26 PLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYD 85 Query: 280 SRSGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIKVEVIXAAACRRPQVKQF 459 SRSG HNMYREYRDL+ GAVTQCYRDMGA HRARAHSIQI+KVE I A+ CRRP VKQF Sbjct: 86 SRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQF 145 Query: 460 HNSTIRFPLPKRVHHYKRLNTFAYKRPXTYF 552 H+S I+FPLP RV + F KRP T+F Sbjct: 146 HDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176 Score = 35.5 bits (78), Expect = 0.14 Identities = 16/27 (59%), Positives = 19/27 (70%) Frame = +3 Query: 24 MKAKGQLREYEVIGRKLPSENEPKPPL 104 MKA G LREY+V+GR LP+ PPL Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPL 27 >BC007512-1|AAH07512.1| 176|Homo sapiens ribosomal protein L18a protein. Length = 176 Score = 206 bits (502), Expect = 6e-53 Identities = 95/151 (62%), Positives = 110/151 (72%) Frame = +1 Query: 100 PCYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYE 279 P Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++G NFGIWLRY+ Sbjct: 26 PLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYD 85 Query: 280 SRSGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIKVEVIXAAACRRPQVKQF 459 SRSG HNMYREYRDL+ GAVTQCYRDMGA HRARAHSIQI+KVE I A+ CRRP VKQF Sbjct: 86 SRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQF 145 Query: 460 HNSTIRFPLPKRVHHYKRLNTFAYKRPXTYF 552 H+S I+FPLP RV + F KRP T+F Sbjct: 146 HDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176 Score = 35.5 bits (78), Expect = 0.14 Identities = 16/27 (59%), Positives = 19/27 (70%) Frame = +3 Query: 24 MKAKGQLREYEVIGRKLPSENEPKPPL 104 MKA G LREY+V+GR LP+ PPL Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPL 27 >AK222647-1|BAD96367.1| 176|Homo sapiens ribosomal protein L18a variant protein. Length = 176 Score = 206 bits (502), Expect = 6e-53 Identities = 95/151 (62%), Positives = 110/151 (72%) Frame = +1 Query: 100 PCYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYE 279 P Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++G NFGIWLRY+ Sbjct: 26 PLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYD 85 Query: 280 SRSGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIKVEVIXAAACRRPQVKQF 459 SRSG HNMYREYRDL+ GAVTQCYRDMGA HRARAHSIQI+KVE I A+ CRRP VKQF Sbjct: 86 SRSGTHNMYREYRDLTAAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQF 145 Query: 460 HNSTIRFPLPKRVHHYKRLNTFAYKRPXTYF 552 H+S I+FPLP RV + F KRP T+F Sbjct: 146 HDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176 Score = 35.5 bits (78), Expect = 0.14 Identities = 16/27 (59%), Positives = 19/27 (70%) Frame = +3 Query: 24 MKAKGQLREYEVIGRKLPSENEPKPPL 104 MKA G LREY+V+GR LP+ PPL Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPL 27 >AC005796-1|AAC62828.1| 176|Homo sapiens ribosomal protein L18a protein. Length = 176 Score = 206 bits (502), Expect = 6e-53 Identities = 95/151 (62%), Positives = 110/151 (72%) Frame = +1 Query: 100 PCYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYE 279 P Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++G NFGIWLRY+ Sbjct: 26 PLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVFEKSPLRVKNFGIWLRYD 85 Query: 280 SRSGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIKVEVIXAAACRRPQVKQF 459 SRSG HNMYREYRDL+ GAVTQCYRDMGA HRARAHSIQI+KVE I A+ CRRP VKQF Sbjct: 86 SRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQF 145 Query: 460 HNSTIRFPLPKRVHHYKRLNTFAYKRPXTYF 552 H+S I+FPLP RV + F KRP T+F Sbjct: 146 HDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 176 Score = 35.5 bits (78), Expect = 0.14 Identities = 16/27 (59%), Positives = 19/27 (70%) Frame = +3 Query: 24 MKAKGQLREYEVIGRKLPSENEPKPPL 104 MKA G LREY+V+GR LP+ PPL Sbjct: 1 MKASGTLREYKVVGRCLPTPKCHTPPL 27 >AY779046-1|AAX47571.1| 136|Homo sapiens ribosomal protein L18a-like protein protein. Length = 136 Score = 155 bits (377), Expect = 9e-38 Identities = 76/131 (58%), Positives = 89/131 (67%), Gaps = 3/131 (2%) Frame = +1 Query: 46 GNMRLSAVSSRRRTSPNL---PCYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXX 216 G +R V RR +P P Y+MRIF+P+ +VAKSRFWYF+ QLKK KK++G Sbjct: 5 GTLREYKVVGRRLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGETVYC 64 Query: 217 XXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSI 396 NFGIWLR +SRSG HNMYREYRDL+ GAVTQCYRDMGA HRARAHSI Sbjct: 65 GQVFEKSPLRVKNFGIWLRCDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSI 124 Query: 397 QIIKVEVIXAA 429 QI+ VE I A+ Sbjct: 125 QIMMVEEIAAS 135 Score = 37.5 bits (83), Expect = 0.036 Identities = 16/27 (59%), Positives = 20/27 (74%) Frame = +3 Query: 24 MKAKGQLREYEVIGRKLPSENEPKPPL 104 MKA G LREY+V+GR+LP+ PPL Sbjct: 1 MKASGTLREYKVVGRRLPTPKCHTPPL 27 >X80822-1|CAA56788.1| 140|Homo sapiens protein ( H.sapiens mRNA for ORF. ). Length = 140 Score = 155 bits (376), Expect = 1e-37 Identities = 70/100 (70%), Positives = 78/100 (78%) Frame = +1 Query: 253 NFGIWLRYESRSGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIKVEVIXAAA 432 NFGIWL Y+SRSG HNMYREYRDL+ GAVTQCYRDMGA HRARAHSIQI+KVE I + Sbjct: 41 NFGIWLSYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAVSK 100 Query: 433 CRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPXTYF 552 CRRP VKQFH+S I+FPLP RV + F KRP T+F Sbjct: 101 CRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTKRPNTFF 140 >AB007175-1|BAA28596.1| 66|Homo sapiens ribosomal protein L18a protein. Length = 66 Score = 91.5 bits (217), Expect = 2e-18 Identities = 43/66 (65%), Positives = 49/66 (74%) Frame = +1 Query: 355 RDMGAXHRARAHSIQIIKVEVIXAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYK 534 RDMGA HRARAHSIQI+KVE I A+ CRRP VKQFH+S I+FPLP RV + F K Sbjct: 1 RDMGARHRARAHSIQIMKVEEIAASKCRRPAVKQFHDSKIKFPLPHRVLRRQHKPRFTTK 60 Query: 535 RPXTYF 552 RP T+F Sbjct: 61 RPNTFF 66 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 84,780,856 Number of Sequences: 237096 Number of extensions: 1655814 Number of successful extensions: 3368 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3273 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3361 length of database: 76,859,062 effective HSP length: 87 effective length of database: 56,231,710 effective search space used: 6354183230 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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