Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D17
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   167   7e-42
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.      30   1.5  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    24   5.2  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  167 bits (405), Expect = 7e-42
 Identities = 75/154 (48%), Positives = 100/154 (64%)
 Frame = +1

Query: 91  PNLPCYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWL 270
           P  P +KM+IF+ + ++AKSRFWYF+  L++ KK  G                 N+G+WL
Sbjct: 26  PVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQVFEKNPGTVKNYGVWL 85

Query: 271 RYESRSGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIKVEVIXAAACRRPQV 450
           +Y+SR+G HNMYREYRD +V GAVTQCYRDMGA HRA+A  I I+KV+ + A   +R  +
Sbjct: 86  KYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHILKVQTVKAEDTKRAGI 145

Query: 451 KQFHNSTIRFPLPKRVHHYKRLNTFAYKRPXTYF 552
           K FH++ IRFPLP RV   K L+ F   R  T+F
Sbjct: 146 KMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179



 Score = 33.9 bits (74), Expect = 0.090
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +3

Query: 27  KAKGQ-LREYEVIGRKLPSENEPKPPL 104
           KA G+ L EY V+GRK+P+E EP  P+
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPI 30


>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
           protein R03E1.1 protein.
          Length = 1043

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 446 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLXLTSCNCNVRHITIKPM 592
           R  SST  P+DS C  +  +TR   P  +R   ++     + H  + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261


>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
          Length = 1043

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 446 RSNSSTTAPSDSHCPNVCTTTRDLIPSRTRGLXLTSCNCNVRHITIKPM 592
           R  SST  P+DS C  +  +TR   P  +R   ++     + H  + PM
Sbjct: 213 RHRSSTWTPTDSSCSGISPSTRVPPPIPSRAPVMSPVQSPLTHPPVAPM 261


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +3

Query: 321 PECXWSCHSVLQRYGSXTQSPS-SFNTDYQSGSNQXCCVSPSTGQT--VPQQHHQIPIAQ 491
           P+C  SCHS     G+   S S S NT+     +  C   P   Q   +  Q  QI I Q
Sbjct: 213 PKCTQSCHSQCISQGNPAASCSNSCNTE----CSDKCSTRPVQAQVQQIQPQQVQITIPQ 268

Query: 492 TC 497
           TC
Sbjct: 269 TC 270


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 23.8 bits (49), Expect(2) = 5.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 328 HSGHGIHGTC 299
           H GHG HG+C
Sbjct: 285 HGGHGRHGSC 294



 Score = 22.6 bits (46), Expect(2) = 5.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 334 HXHSGHGIHGT 302
           H H GHG HG+
Sbjct: 253 HGHGGHGGHGS 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,398,892
Number of Sequences: 27780
Number of extensions: 262920
Number of successful extensions: 737
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)