Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D17
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)         142   2e-34
At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW    140   5e-34
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...   137   6e-33
At2g35200.1 68415.m04317 expressed protein                             30   1.0  
At3g57460.1 68416.m06397 expressed protein weak similarity to SP...    29   2.4  
At2g23570.1 68415.m02813 hydrolase, alpha/beta fold family prote...    27   7.2  

>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score =  142 bits (344), Expect = 2e-34
 Identities = 65/141 (46%), Positives = 89/141 (63%)
 Frame = +1

Query: 64  AVSSRRRTSPNLPCYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXX 243
           A+ + +   P +  Y+M++++ + + AKS+FWYFLR+LKK KK+ G              
Sbjct: 15  ALPTEKDVQPKI--YRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNPT 72

Query: 244 XXXNFGIWLRYESRSGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIKVEVIX 423
              NFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M + HR R   IQIIK   + 
Sbjct: 73  TIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVP 132

Query: 424 AAACRRPQVKQFHNSTIRFPL 486
           A  C+R   KQFHNS I+FPL
Sbjct: 133 AKLCKRESTKQFHNSKIKFPL 153


>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score =  140 bits (340), Expect = 5e-34
 Identities = 61/127 (48%), Positives = 84/127 (66%)
 Frame = +1

Query: 106 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESR 285
           Y+M++++ + ++AKS+FWY+LR+ KK KK+ G                 NFGIWLRY+SR
Sbjct: 27  YRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINEIFEKNPTTIKNFGIWLRYQSR 86

Query: 286 SGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIKVEVIXAAACRRPQVKQFHN 465
           +G HNMY+EYRD ++ GAV Q Y +M + HR R   IQIIK   + A+ C+R   KQFHN
Sbjct: 87  TGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVPASLCKRESTKQFHN 146

Query: 466 STIRFPL 486
           S I+FPL
Sbjct: 147 SKIKFPL 153



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 39  QLREYEVIGRKLPSENEPKPPL 104
           +L +Y+V+GR LP+E + +P +
Sbjct: 5   RLHQYQVVGRALPTEKDEQPKI 26


>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score =  137 bits (331), Expect = 6e-33
 Identities = 60/127 (47%), Positives = 81/127 (63%)
 Frame = +1

Query: 106 YKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGXXXXXXXXXXXXXXXXXNFGIWLRYESR 285
           Y+M+++  + + AKS+FWYF+R+LKK KK+ G                 N+GIWLRY+SR
Sbjct: 27  YRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNPTTIKNYGIWLRYQSR 86

Query: 286 SGVHNMYREYRDLSVXGAVTQCYRDMGAXHRARAHSIQIIKVEVIXAAACRRPQVKQFHN 465
           +G HNMY+EYRD ++ G V Q Y +M + HR R   IQIIK   + A  C+R   KQFHN
Sbjct: 87  TGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATVPAKLCKREITKQFHN 146

Query: 466 STIRFPL 486
           S I+FPL
Sbjct: 147 SKIKFPL 153



 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 39  QLREYEVIGRKLPSENEPKPPL 104
           +  +Y+V+GR LP+EN+  P +
Sbjct: 5   RFHQYQVVGRALPTENDEHPKI 26


>At2g35200.1 68415.m04317 expressed protein
          Length = 201

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 118 IFSPDPIVAKSRFWYFLRQLKKFKKT 195
           +FSP P+ +K   WYF   +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185


>At3g57460.1 68416.m06397 expressed protein weak similarity to
           SP|O43847 Nardilysin precursor (EC 3.4.24.61)
           (N-arginine dibasic convertase) {Homo sapiens}
          Length = 356

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 448 VKQFHNSTIRFPLPKRVHHYK 510
           +KQ HN T+ +P+   +HHY+
Sbjct: 44  IKQGHNLTVSWPVTPSIHHYE 64


>At2g23570.1 68415.m02813 hydrolase, alpha/beta fold family protein
           similar to ethylene-induced esterase [Citrus sinensis]
           GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
           serpentina] GI:6651393
          Length = 179

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -1

Query: 219 LNRDNFTSGLLELLKLSQEIPETRFGDNWIRRENSHFIAREVWARSPTGAYGR*PHIP-- 46
           L  D F+  +  ++ L+  +P+TR    ++  +    I RE W  +  G YG  P  P  
Sbjct: 8   LAADIFSCKISAVVFLAAFMPDTRNPPAYVFEKLIRSIPREEWLDTAFGRYGN-PDCPLE 66

Query: 45  STVL*PSFL 19
           S +L P F+
Sbjct: 67  SALLGPKFM 75


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,651,393
Number of Sequences: 28952
Number of extensions: 244455
Number of successful extensions: 655
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)