Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D15
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    26   0.31 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.72 
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   2.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.9  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
 Frame = +1

Query: 424 KSVGLELENSPAYLHS--RAVTAGFQEYIEARTLFSLMETKKLISWPEIRXEFVFSIPEA 597
           KS+  + ENS    H   R     F++    R + ++ E ++  S  E       SIP  
Sbjct: 67  KSISSDEENSFQGKHKSRRKAPQSFEDIQHQRVMANVRERQRTQSLNEAFASLRKSIPTM 126

Query: 598 ESDKKRTVITMVLHLDYM 651
            SDK   + T+ L   Y+
Sbjct: 127 PSDKLSKIQTLKLAARYI 144


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 0.72
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +1

Query: 208 PDSPILAMFKNAALKLNERQDRHERLVKLSRDITIXSKRIIFLLHSAITEES 363
           P+S +   FKN   K  ++Q +H +   + +   + +K    L  ++ T  S
Sbjct: 109 PESRVQVWFKNRRAKCRQQQKQHNQQQSVEKSSKLKNKSAPILTKTSPTPVS 160


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 213 VRSERSSSFPRNCR*SLLIAITVTSLPSS 127
           V S R+    R CR + L+ +  TS PS+
Sbjct: 239 VTSPRARPLARTCRDNRLLVLAGTSSPSN 267


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 181 AREAAASLAPDSPILAMFKNAALKLNERQDRHERLV 288
           A  AAA L P +  +A + NAA      Q  H  ++
Sbjct: 131 AAAAAALLPPQTAAMAAYLNAAAVAAAAQQSHRLMM 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,894
Number of Sequences: 336
Number of extensions: 1975
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)