Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D15
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          66   6e-12
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    31   0.19 
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   1.8  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    26   4.1  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   4.1  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    26   5.5  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   7.2  

>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 65.7 bits (153), Expect = 6e-12
 Identities = 39/101 (38%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
 Frame = +1

Query: 253 LNERQDRHERLVKLSRDITIXSKRIIFLLHSAITEESTAKVIE-EAKERFQKLIKGPIKS 429
           L E QD+ E++++LSR+ITI SKR+IFLLH   + +      + +    F+K I   ++S
Sbjct: 12  LQEDQDKREKIIRLSREITIQSKRMIFLLHQTSSSDGFPLPKDFDRTSIFEKKIHKELES 71

Query: 430 VGLELENSPAYLHSRAVTAGFQEYIEARTLFSLMETKKLIS 552
           +  EL    A   S A T G QEY+EA T    ++T  L+S
Sbjct: 72  LKRELAGLNADKFSSACTHGLQEYVEAVTFKFWLQTGTLLS 112


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +1

Query: 211 DSPILAMFKNAALKLNERQDRHERLVKLSRDITIXSKRIIFLLHSAITEESTAKVIEEAK 390
           D P +      ALK N   ++    VKL+RD  +    I+   ++ I     AK I++AK
Sbjct: 61  DGPTICKGNEIALKNNITLEKVFETVKLARDAGVTIPIILMGYYNPIFSYGDAKTIQKAK 120

Query: 391 E 393
           E
Sbjct: 121 E 121


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 370 KVIEEAKERFQKLIKGPIKSVGLELENSPAYLH 468
           K  EE K++ Q L +   KSV ++L+  P Y H
Sbjct: 217 KAKEETKQKLQDLYE-EFKSVAVDLQGDPKYQH 248


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +1

Query: 70  SLIFIRIAFVR*YWFKMSGRGRQRSYRNRNQQTLSTVAREAAASLAPDSPI 222
           +L+F ++   +  W+ +     Q ++RN++++  + +     +SL PDS I
Sbjct: 11  ALLFGQLLPPKYSWYSVKRWQSQLTFRNKSKRNTNRIMLSVVSSLNPDSLI 61


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 214  SPILAMFKNAALKLNERQDRHERLVKLSR 300
            S ++  F+  +L+L E+Q R E L+K  R
Sbjct: 1408 SSLVRRFEELSLQLQEKQKRDEELIKARR 1436


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 22  SITQSY*LYYFKNKVISL-IFIRIAFVR*YWFKMSGRGRQRSYRNRNQQ 165
           SI Q + LY F    + + +   I+F+R YWF+   +   R  R R  Q
Sbjct: 74  SIWQQFILYGFTAITVPIWMHGSISFIRLYWFRRKFKDVVRQNRTRKFQ 122


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 144  TSLPSSS*HLEPVLADEGDS 85
            T+ P +S ++EPVLAD+ D+
Sbjct: 1095 TNQPGASENVEPVLADDSDA 1114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,938
Number of Sequences: 5004
Number of extensions: 34277
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)