Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D15
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44369| Best HMM Match : Translin (HMM E-Value=4.9e-07)              97   1e-20
SB_41514| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_5817| Best HMM Match : DpmII (HMM E-Value=1.5)                      29   4.4  
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)                     28   5.8  
SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_44369| Best HMM Match : Translin (HMM E-Value=4.9e-07)
          Length = 166

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 53/154 (34%), Positives = 89/154 (57%)
 Frame = +1

Query: 148 RNRNQQTLSTVAREAAASLAPDSPILAMFKNAALKLNERQDRHERLVKLSRDITIXSKRI 327
           R+R ++ + T    + A +A DSP++A F+    +L+ R D++ER+VK SRD+TI SKR 
Sbjct: 4   RSRKRK-IETDKDSSEAKVANDSPVIAAFQQFQEELDLRHDKYERIVKSSRDLTIQSKRA 62

Query: 328 IFLLHSAITEESTAKVIEEAKERFQKLIKGPIKSVGLELENSPAYLHSRAVTAGFQEYIE 507
           IF LH     +++ K+I E   +  + IK  +K + LELE    +  SRA + G QEYIE
Sbjct: 63  IFNLHRIAGADNSEKIIHEVGRKLHE-IKQYLKKIALELEGEDPFRFSRAYSPGLQEYIE 121

Query: 508 ARTLFSLMETKKLISWPEIRXEFVFSIPEAESDK 609
           + + +  ++ K L+ + E+     F   + ++ K
Sbjct: 122 SLSFYYYLKNKTLVPFQEVVENCTFPAEDGKALK 155


>SB_41514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/60 (20%), Positives = 34/60 (56%)
 Frame = +1

Query: 466 HSRAVTAGFQEYIEARTLFSLMETKKLISWPEIRXEFVFSIPEAESDKKRTVITMVLHLD 645
           HS+ V+  F  ++E  ++FS+M   +++    ++   V  + ++++  ++TV  +++  D
Sbjct: 29  HSKRVSEYFSGFLECFSVFSMMAPARILVQKLVQVHDVIPLDQSKTFTRQTVTLIIVSQD 88


>SB_5817| Best HMM Match : DpmII (HMM E-Value=1.5)
          Length = 529

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
 Frame = +1

Query: 370 KVIEEAKERF-----QKLIKGPIKSVGLELENSPAYLHSRAVTAGFQEYIEARTLFSLME 534
           KVI+   +RF     Q+    PIK    +L N   YL ++ V  GF    + R L    +
Sbjct: 199 KVIQSLMKRFIKPDVQQQANSPIKLAKFDLSNKENYLDAKKVDVGFVAQAKIRKLLLDKK 258

Query: 535 TKKLISWPEIRXEF 576
              L ++ + R EF
Sbjct: 259 VSGLQAF-QFRNEF 271


>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
          Length = 1447

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 283 LVKLSRDITIXSKRIIFLLHSAITEESTAKVIEEAKERFQK 405
           L ++++D      +I FLL   +  + T + +E+ K+ FQK
Sbjct: 342 LTQVAKDTNSVKNQISFLLKERVGNKETIRKLEKEKDLFQK 382


>SB_11521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
 Frame = +1

Query: 250 KLNERQDRHER--LVKLSRDITIXSKRIIFLLHSAITEESTAKVIEEAKERFQKLIK 414
           KLNERQD+H+R  L +  R   +   R   LL+    +   AK+ E+    FQ+ +K
Sbjct: 134 KLNERQDKHKRKSLDEEVRQDILSWNRADSLLYDHFNKTLWAKIKEQGAP-FQRELK 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,706,569
Number of Sequences: 59808
Number of extensions: 235383
Number of successful extensions: 496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)