Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D15
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03780.1 68415.m00338 translin family protein similar to SP|Q...    65   3e-11
At2g32240.1 68415.m03940 expressed protein contains Pfam profile...    31   0.51 
At5g09560.1 68418.m01107 KH domain-containing protein various pr...    30   1.2  
At2g36420.1 68415.m04471 expressed protein                             30   1.2  
At1g16480.1 68414.m01971 pentatricopeptide (PPR) repeat-containi...    30   1.5  
At3g51630.1 68416.m05662 protein kinase family protein contains ...    29   2.7  
At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kina...    28   4.7  
At5g64180.1 68418.m08058 expressed protein                             27   8.2  

>At2g03780.1 68415.m00338 translin family protein similar to
           SP|Q99598 Translin-associated protein X
           (Translin-associated factor X) {Homo sapiens}; contains
           Pfam profile PF01997: Translin family
          Length = 287

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 41/137 (29%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
 Frame = +1

Query: 193 AASLAPDSPILAMFKNAALKLNERQDRHERLVKLSRDITIXSKRIIFLLHSAITEESTAK 372
           A +++ +S +   F   A  LN   ++ ER+VK+SRDIT+ SK++IF +H  +++++  +
Sbjct: 41  ARTMSTESSMKDAFSTYADYLNNFNEKRERVVKVSRDITMNSKKVIFQVH-RLSKDNKEE 99

Query: 373 VIEEAKERFQKLIKGPIKSVGLELENSPAYLHSRAVTAGFQEYIEARTLFSLMETKKLIS 552
           V+E+A +  + +       +  EL+ +  +   RA + G QEY+EA T +    +  L +
Sbjct: 100 VLEKAGKDLEAVRDQHFARLMKELQGTDFWKLRRAYSPGVQEYVEAATFYKFCLSGTLCT 159

Query: 553 WPEIRXEFV-FSIPEAE 600
             EI    V  S P  E
Sbjct: 160 LDEINTTLVPLSDPSLE 176


>At2g32240.1 68415.m03940 expressed protein contains Pfam profile:
           PF04508 viral A-type inclusion protein repeat
          Length = 775

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
 Frame = +1

Query: 130 GRQRSYRNRNQQTLSTVAREAAASLAPDSPILAMFKNAALKLNERQDRHERLVKLSRDIT 309
           G+  S + + +QTL  +A  AA S+  +  +   F  A  K  +     E L + +  + 
Sbjct: 290 GKSSSLKEKLEQTLGRLA--AAESV--NEKLKQEFDQAQEKSLQSSSESELLAETNNQLK 345

Query: 310 IXSKRIIFLLHSAITEESTA-KVIEEAKERFQK 405
           I  + +  L+ S   E+ TA K +EEA ERF +
Sbjct: 346 IKIQELEGLIGSGSVEKETALKRLEEAIERFNQ 378


>At5g09560.1 68418.m01107 KH domain-containing protein various
           predicted RNA binding proteins, Arabidopsis thaliana
          Length = 563

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
 Frame = +1

Query: 238 NAALKLNERQ-DRHERLVKLS-----RDITIXSKRIIFLLHSAITEESTAKVIE 381
           +A++ + +R  D  ERLV ++     +DIT  S+R + L+ S + E +TAKV++
Sbjct: 334 DASISVGDRHPDCDERLVTITAFEKTKDITSESQRALVLVFSNMYENATAKVLD 387


>At2g36420.1 68415.m04471 expressed protein 
          Length = 439

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +3

Query: 75  NIYTNRLRPLILVQDVRTRKAKKLP*SQSTDSIYSCEGSCCFARSGQSD 221
           N Y   LR  +   D+R +K K    +     ++SCE SC FA     D
Sbjct: 24  NHYIGNLRSQMGCSDMRVKKRKSDNVATFPPGLFSCENSCFFAAHKSPD 72


>At1g16480.1 68414.m01971 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 905

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 484 AGFQEYIEARTLFSLMETKKLISWPEIRXEFV 579
           AG    +EA  +F  M TK LISW  +   FV
Sbjct: 275 AGAGRSVEANLVFKQMPTKDLISWNSLMASFV 306


>At3g51630.1 68416.m05662 protein kinase family protein contains
           Pfam profile: PF00069 protein kinase domain
          Length = 549

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 349 ITEESTAKVIEEAKERFQKLIKGPIKSVGLELENSPAYLH 468
           ITE  T+  + E + ++QK+    IKS   ++ N  AYLH
Sbjct: 104 ITELFTSGTLREYRRKYQKVDIRAIKSWARQILNGLAYLH 143


>At1g34260.1 68414.m04252 phosphatidylinositol-4-phosphate 5-kinase
           family protein low similarity to SP|Q9Z1T6 FYVE
           finger-containing phosphoinositide kinase (EC 2.7.1.68)
           (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
           (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
           profile PF01504: Phosphatidylinositol-4-phosphate
           5-Kinase
          Length = 1456

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 349 ITEESTAKVIEEAKERFQKLIKGPIKSVGLELENS 453
           + EE+   ++EEA  +F+ ++   IKS G  +E S
Sbjct: 144 VYEENRRVMLEEADSKFKFIVSQLIKSAGFSIEES 178


>At5g64180.1 68418.m08058 expressed protein
          Length = 158

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
 Frame = +1

Query: 187 EAAASLAPDSPILAMFKNAALKLNERQDRHERLVKLSRDITIXSKRIIFL---LHSAITE 357
           E A++L  DS    + K A     +   R   + + +R I +  +R+  L   L +AIT 
Sbjct: 21  EMASNL--DSLQKLLLKKAVFVEEDTFSRASLVSEQARTIKVLEQRVQTLERELDAAITA 78

Query: 358 ESTAKVIEEAKERFQKLIKGPIKSVGLELENSPAY--LHSRAVTAGFQEYIEAR 513
            + A+  +   E  QK  +   + V  ELEN+     LH   +  G QE I  R
Sbjct: 79  AAHARSEKRQAESSQKAAESRAQDVTKELENTTKVFKLHMEEL-RGMQEQISKR 131


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,471,895
Number of Sequences: 28952
Number of extensions: 171223
Number of successful extensions: 470
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)