Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D13
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    88   9e-19
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   1.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.1  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    27   3.1  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    26   5.5  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   7.2  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    25   7.2  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   9.5  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   9.5  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   9.5  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 88.2 bits (209), Expect = 9e-19
 Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 1/186 (0%)
 Frame = +3

Query: 99  MAPPYYADLGKKANDVFSKGYHFGVFKLDLXTKSESGVEFTSGITSNQES-GKVFGSLSS 275
           MAPP YA + K  ND+  + +  G   L + T + +GV F   ++ NQ++ G + G L +
Sbjct: 1   MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLET 58

Query: 276 KFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTN 455
            F  K  GLT ++ W T N L + + + ++ A GL + +  TF+P T  KT  L  +  +
Sbjct: 59  SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAIL--NLEH 116

Query: 456 DTVAVNTNLDLDLAGPXXXXXXXLNYXGWLAGVHTQFDTQKAKFSXNNFALGYQSGDFAL 635
               ++T+  ++           + + G+LAG    +D QK   S     +GY +   ++
Sbjct: 117 QHPLIHTHASVNALERKFLGDFTVGHEGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSV 176

Query: 636 HTNVXN 653
                N
Sbjct: 177 ALQASN 182


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +3

Query: 384  VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 488
            V++E    P+  T +G+++T+F  DT+ +   L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 55   LCEIIPTL*IYKTQTWLPHIMLTLERR 135
            + EI+P     KT +WLP++ L LE +
Sbjct: 1143 MVEILPGSFSLKTPSWLPNLTLNLESK 1169



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 583  FAFCVSNWVCTPASQPW*FSTAATXTTG 500
            F F  S+W   P  +PW FST A    G
Sbjct: 1677 FNFAKSHW--EPVIEPWTFSTTAIMKDG 1702


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 195 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 344
           +S SG    S + S   +  V  +L S   +K + LTF  +W   + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +1

Query: 193 PRASLVLNSP---AESPPTRKAERFLAAFPPNLQ 285
           P   L +  P   +  P T+KA     +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = -1

Query: 272  GKAAKNLSAFLVGGDSAGEFNTRLALGXQVEFENTKVIALAEDIIGL-LSKVSIIWGSHV 96
            G  +KN S  L+G   AG+      +  Q+ F+   +  L ED + + +++V    G   
Sbjct: 858  GSISKNASIILIGMRGAGKTTIGKIIAKQLNFKFLDLDELLEDYLEMPIAEVIFRMGWDA 917

Query: 95   CVL*IHKV 72
              L  HKV
Sbjct: 918  FRLEEHKV 925


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 242 LVGGDSAGEFNTRLALGXQVEFENTKVIALAEDIIG 135
           L GG   G+F++ L  G +  ++ T+    AE +IG
Sbjct: 72  LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 333 TLATDITIQDKIAAGLKVTLEGTFAPQTGTKTG 431
           T+A D++   ++ A   VTLEGT   +TG  TG
Sbjct: 630 TVARDLSYNKRLNAKT-VTLEGTVIHKTGLITG 661


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 219 TSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 344
           T+G  +   +G V G LS    +    + F EK++ +  LAT
Sbjct: 487 TTGANNPMLAGNVVGLLSPALYILILSIIFPEKYDFNRLLAT 528


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = -1

Query: 260 KNLSAFLVGGDSAGEFNTRLALGXQVEFENTKVIALAEDIIGLLSKVSIIWGSHVCVL*I 81
           +  + F++  +  G F+  +++    +  +   I+ ++D+   L  V  I G H C L  
Sbjct: 131 REFAPFVLHREYTGHFDDIVSISWSAD--SRFFISTSKDLTARLHSVDPIEGFHPCALTG 188

Query: 80  HKVGIIS 60
           HK  ++S
Sbjct: 189 HKNTVVS 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,447,926
Number of Sequences: 5004
Number of extensions: 45587
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)