Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D13
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)                    194   4e-50
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)                 31   1.1  
SB_59295| Best HMM Match : SET (HMM E-Value=0)                         30   1.9  
SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_57317| Best HMM Match : SSF (HMM E-Value=0)                         28   7.6  
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
          Length = 379

 Score =  194 bits (474), Expect = 4e-50
 Identities = 85/181 (46%), Positives = 122/181 (67%)
 Frame = +3

Query: 105 PPYYADLGKKANDVFSKGYHFGVFKLDLXTKSESGVEFTSGITSNQESGKVFGSLSSKFA 284
           P  Y DLGK+A DVF KGY FG  K+DL T +++GVEF +  +S  ++GKVFGSL +K+ 
Sbjct: 100 PVKYEDLGKEARDVFGKGYGFGCVKVDLKTTTKNGVEFKTAGSSMNDTGKVFGSLETKYK 159

Query: 285 VKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTV 464
             DYG++ +EKW TDN L+++IT++D+IA GLK+  + TFAP TG K+ K+KT++  D +
Sbjct: 160 YSDYGISLSEKWTTDNVLSSEITVEDQIAKGLKLQFDTTFAPNTGKKSAKIKTAYKQDYL 219

Query: 465 AVNTNLDLDLAGPXXXXXXXLNYXGWLAGVHTQFDTQKAKFSXNNFALGYQSGDFALHTN 644
               ++D D AGP       + Y GW AG    +DT K+K   NNF+LGY++ DF +H+ 
Sbjct: 220 HATGDVDFDFAGPTVQGSAVVGYEGWHAGYQVAYDTSKSKLIANNFSLGYRAKDFQIHSA 279

Query: 645 V 647
           V
Sbjct: 280 V 280


>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
          Length = 672

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = -2

Query: 499 PAKSRSKLVFTATVSLVNEVFNFPVLVPVCG-AKVPSRVTLRPAAILSWIVMSVANVLSV 323
           P K     VF AT+ L + V N  V+   CG A+ P    L     ++ +V +++  LSV
Sbjct: 26  PVKGILLGVFAATI-LGSLVGNIAVIRATCGMARTPVTYILVMNMAVAELVYTLSMSLSV 84

Query: 322 FHFSVKVKP*SFTANLEERLPKTFPLSWLEVIP 224
            +  ++  P  F   L +   + +P+ +  VIP
Sbjct: 85  IYLELEYWPYGFRCKLSDIGYRPYPILFPIVIP 117


>SB_59295| Best HMM Match : SET (HMM E-Value=0)
          Length = 1230

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 321 NTD-NTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV 470
           +TD N L +D + +DK     K   E T    +   TGKL+T +  DT+ +
Sbjct: 809 STDTNLLCSDASPEDKTTKEAKSVSETTPDTSSEESTGKLETKYNADTIDI 859


>SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 856

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 402 FAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPXXXXXXXLNYXG 539
           +AP    K  +L T F +DT AVN N    ++         +NY G
Sbjct: 172 YAPCNKPKLKRLLTRFVSDTGAVNQNFQTAMSEKFPVSSVKMNYLG 217


>SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = +3

Query: 222 SGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 365
           SG+   +ESG+   SL+   A     L  T+  NTD T  TD T Q+K
Sbjct: 65  SGLECKKESGEESDSLALSAATDGVLLVATDTQNTDGTW-TDGTDQEK 111


>SB_57317| Best HMM Match : SSF (HMM E-Value=0)
          Length = 389

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 260 KNLSAFLVGGDSAGEFNTRLALG 192
           KNLS +++GG S G F T L+ G
Sbjct: 48  KNLSDYILGGRSLGSFVTALSAG 70


>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 972

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 367  ILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERLPKTFPLSWLEVIPLVNSTPDSLL 194
            + ++   S ANVL V+  SV +KP      LEE       L W +     ++TP++++
Sbjct: 871  LCNYTYSSAANVLEVYELSVGIKPSEVEILLEELKSSGALLEWPQD---ASTTPETVI 925


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 327  DNTLATDITI--QDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNT 476
            ++TLA +ITI  +  +A G  +  E TFAP+T TK  +   +    T    T
Sbjct: 1724 ESTLAPEITIASESTVAPGTTMAPETTFAPET-TKAPETTLALETTTAPETT 1774


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,508,853
Number of Sequences: 59808
Number of extensions: 351720
Number of successful extensions: 887
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)