Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D13
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin ...    49   3e-06
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    41   8e-04
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34...    31   0.51 
At3g13610.1 68416.m01713 oxidoreductase, 2OG-Fe(II) oxygenase fa...    29   2.7  
At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot...    28   6.2  
At2g04740.1 68415.m00484 ankyrin repeat family protein contains ...    27   8.2  

>At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin II
           [Solanum tuberosum] GI:515360; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 274

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 39/173 (22%), Positives = 78/173 (45%)
 Frame = +3

Query: 102 APPYYADLGKKANDVFSKGYHFGVFKLDLXTKSESGVEFTSGITSNQESGKVFGSLSSKF 281
           +P  +AD+GKKA D+ +K Y F   K  L   S +G EF +  T  ++    FG +S+ +
Sbjct: 4   SPAPFADIGKKAKDLLNKDYIFD-HKFTLTMLSATGTEFVA--TGLKKDDFFFGDISTLY 60

Query: 282 AVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDT 461
             K        K ++ ++++T +T+++ + +  K  +          K+GKL   + +  
Sbjct: 61  --KGQNTIVDLKIDSHSSVSTKVTLKNLLPSA-KAVISFKIPDH---KSGKLDVQYVHPH 114

Query: 462 VAVNTNLDLDLAGPXXXXXXXLNYXGWLAGVHTQFDTQKAKFSXNNFALGYQS 620
             +N+++ L+   P       +       G    FDT  +  +  N  +G+ +
Sbjct: 115 ATLNSSIGLN-PTPLLDLSATIGSQNVCLGGEVSFDTASSSLTKYNAGIGFNN 166


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 40.7 bits (91), Expect = 8e-04
 Identities = 25/86 (29%), Positives = 48/86 (55%)
 Frame = +3

Query: 105 PPYYADLGKKANDVFSKGYHFGVFKLDLXTKSESGVEFTSGITSNQESGKVFGSLSSKFA 284
           P  + D+GKKA D+ ++ Y+    K  + T S SGV  TS  T+ ++ G     +++++ 
Sbjct: 5   PGLFTDIGKKAKDLLTRDYNSDQ-KFSISTYSASGVALTS--TALKKGGVHAADVATQYK 61

Query: 285 VKDYGLTFTEKWNTDNTLATDITIQD 362
            K+    F  K +TD+++ T +T+ +
Sbjct: 62  YKN--ALFDVKIDTDSSVLTTVTLTE 85


>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 226

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 105 PPYYADLGKKANDVFSKGYHFGVFKLDLXTKSESGVEFTSGITSN 239
           P  +AD+GK A D+ ++ Y     K  + T S SGV  TS    N
Sbjct: 5   PGLFADIGKYAKDLLTRDYSTDQ-KFSISTNSVSGVALTSTALKN 48


>At3g13610.1 68416.m01713 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to desacetoxyvindoline
           4-hydroxylase [Catharanthus roseus][GI:1916643],
           flavonol synthase 1 [SP|Q96330]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 361

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -2

Query: 376 PAAILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERLPKTFPLSWLEVIPLVN-STPD 203
           PA +  ++V     V  +    +K  P  +   LEERL   F     E IP+++ S PD
Sbjct: 13  PAEVTDFVVYKGNGVKGLSETGIKALPEQYIQPLEERLINKFVNETDEAIPVIDMSNPD 71


>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
           similar to serine-type carboxypeptidase (SP:P55748)
           [Hordeum vulgare]
          Length = 479

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 305 SQAIVFHCKFGGKAAKNLSAFLVGGDSAGEFNTRLAL 195
           S+AIV H +   K + NL  ++VG     +F+ RL L
Sbjct: 196 SEAIVKHNQGSDKNSINLKGYMVGNGLMDDFHDRLGL 232


>At2g04740.1 68415.m00484 ankyrin repeat family protein contains
           ankyrin repeats, Pfam:PF00023
          Length = 578

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 433 FPVLVPVCGAKVPSRVTLRPAAILSWIVMS-VANVLSVFHFSVKVKP*SFTANLE 272
           FP+   V  A +P   T  PA +  W+V+S +  VL +  + + +   +F A +E
Sbjct: 431 FPLKRAVADALLPHLETATPAELCQWLVLSDMYGVLKIREYCLDLVACNFEAFVE 485


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,985,505
Number of Sequences: 28952
Number of extensions: 247047
Number of successful extensions: 643
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)