BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_D12 (527 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb... 31 0.11 SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 27 1.3 SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 26 4.0 SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 5.3 SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 25 5.3 SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 7.0 SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 7.0 SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 25 9.2 SPCC61.05 |||S. pombe specific multicopy membrane protein family... 25 9.2 >SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pombe|chr 2|||Manual Length = 96 Score = 31.1 bits (67), Expect = 0.11 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Frame = +2 Query: 191 SQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQLLVGSMVFFY 370 S ++ I ++ R P+ S +++ W +K K AP L+ +VF Y Sbjct: 25 SSARMGRIVDFYSRLPHGPAPKKS--SNSFFSWYYKKYLGKNASGAPLLHLVGAVLVFSY 82 Query: 371 AIN-YGRIKHHKNY 409 A Y I+HH+ + Sbjct: 83 ASEYYYHIRHHEEH 96 >SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosaccharomyces pombe|chr 3|||Manual Length = 441 Score = 27.5 bits (58), Expect = 1.3 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -1 Query: 389 FFHS*WHRRRPCCQRVVDRMEPCQPS*VVRTYVAISTRLD 270 F+ S H+ R R ++RME C ++ Y+ T LD Sbjct: 27 FYWSQIHKVRKLVDRSIERMESCSIINIITKYIIEQTDLD 66 >SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 234 Score = 25.8 bits (54), Expect = 4.0 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = -2 Query: 268 ESSGHGRRSLAAATEPRTDFVQLQLTEWSIRFSIVACRIVRPMY 137 ESS HG SL A +P T V L W+ +F+ R+ Y Sbjct: 24 ESSAHGDASLGQADKPLTVDV---LDAWTTQFTKKQTRVFHEAY 64 >SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF hand and WH2 motif |Schizosaccharomyces pombe|chr 1|||Manual Length = 1794 Score = 25.4 bits (53), Expect = 5.3 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Frame = +2 Query: 146 PYDPARYYGKPDTPFSQLK-LNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVG 322 PY P Y G PF Q + + + FG S+ +VA + + + + P+ + Sbjct: 48 PYQPDGYAGNTMLPFQQSQPATQFNNGFGYASQPTGSVADYGQQQQQMYGYNGMMPQTMN 107 Query: 323 MAPFYQ 340 F Q Sbjct: 108 NTGFMQ 113 >SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 438 Score = 25.4 bits (53), Expect = 5.3 Identities = 11/33 (33%), Positives = 17/33 (51%) Frame = -3 Query: 114 VITESHIFRKARCTFLKINSSRYLXNTYFSFSE 16 +I H F A C F+ +S++ L N Y +E Sbjct: 251 LIVAGHSFGAATCAFISGSSTKSLYNDYMFHTE 283 >SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 533 Score = 25.0 bits (52), Expect = 7.0 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = -3 Query: 474 NKTDYILIHTATGTESVL*WY 412 N D I +H T ESV+ WY Sbjct: 473 NNIDRISLHVQTTNESVIKWY 493 >SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces pombe|chr 1|||Manual Length = 1159 Score = 25.0 bits (52), Expect = 7.0 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = -1 Query: 227 RTTNRFRSASTD*MEYQVFHSSVQDRKAHVQQDYT 123 R +NR + D +E +V ++ + RK +QDYT Sbjct: 88 RVSNRSHVRTIDGIEEKVHTNTFEPRKPKQKQDYT 122 >SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 464 Score = 24.6 bits (51), Expect = 9.2 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%) Frame = +3 Query: 273 EPGGDGNISTYNLRRLAWLHS--INYS--LAAWSSSM 371 EP G+G+I+T N RL L S +N++ AAW ++ Sbjct: 289 EPNGEGSIATINGLRLGRLPSQKVNWAEINAAWGMTV 325 >SPCC61.05 |||S. pombe specific multicopy membrane protein family 1|Schizosaccharomyces pombe|chr 3|||Manual Length = 469 Score = 24.6 bits (51), Expect = 9.2 Identities = 9/15 (60%), Positives = 12/15 (80%) Frame = +3 Query: 243 LRLPWPELSVEPGGD 287 +R+PWP L+VE GD Sbjct: 174 IRIPWPVLTVEFYGD 188 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,098,007 Number of Sequences: 5004 Number of extensions: 42542 Number of successful extensions: 98 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 98 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 216376042 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -