Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_D12
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0385 + 17167174-17167440,17173321-17173962 30 1.0
02_05_0516 + 29694631-29695182 30 1.0
11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568 29 2.3
12_02_0874 + 23915303-23915543,23915630-23915713,23915797-239163... 28 5.3
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 27 7.1
11_01_0058 + 438000-438230,438847-438902,440003-440117,440314-44... 27 9.3
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782... 27 9.3
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468... 27 9.3
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402 27 9.3
04_04_0921 - 29431812-29432786 27 9.3
03_02_0581 - 9617039-9617936,9618057-9618502,9618985-9619071,961... 27 9.3
01_06_0208 - 27540077-27540992,27541310-27541497 27 9.3
>09_04_0385 + 17167174-17167440,17173321-17173962
Length = 302
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 292 LPSPPGSTESSGHGRRSLAAATEPRTD 212
LP P +T SSG+ R S +A++ PR D
Sbjct: 146 LPPEPSATTSSGNDRSSSSASSPPRAD 172
>02_05_0516 + 29694631-29695182
Length = 183
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 221 WFGRRSKT-PS--AVAGAFSRAWWRWQHKYVQPKKVGMA 328
W RRSK+ PS A AG + WW W ++ KK G A
Sbjct: 67 WAFRRSKSAPSLGAFAGGPLKRWWDWGVGWLMSKKPGFA 105
>11_06_0572 + 25083629-25083637,25084380-25084808,25085189-25086568
Length = 605
Score = 29.1 bits (62), Expect = 2.3
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -1
Query: 308 VVRTYVAISTRLD*KLRPRQTESCCGDRTTNRFRSASTD*MEYQVFHSSVQDRKAHV 138
++ +A T++ +L P + C D T FR AS D ++ +FH K H+
Sbjct: 518 MIEQRLAYWTKVKCELPPMHHDGECPDHMTTIFRDASRDSIDRAMFHDVFLVIKTHL 574
>12_02_0874 +
23915303-23915543,23915630-23915713,23915797-23916312,
23916426-23916482,23916630-23916802,23916886-23917014,
23917102-23917296,23917381-23917503,23918171-23918284
Length = 543
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 216 VRGSVAAARLRLPWPELSVEPGGDGNISTYNLRRLAWLHS 335
VR S A +R P + VE DG+ T++L +L W HS
Sbjct: 34 VRASDAGSRAA-PGEVVHVEAKSDGSNVTFHLTQLQWHHS 72
>12_02_0792 -
23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +2
Query: 137 VHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKK 316
+HG KPD P L LN+ GS+ SK + + AWW + ++ +
Sbjct: 633 LHGASSTIIKNHKPDNPIPPLTLNQAGSFTVCHSKAWD--SKIVTSAWWVYPYQVSKTAP 690
Query: 317 VG 322
G
Sbjct: 691 TG 692
>11_01_0058 +
438000-438230,438847-438902,440003-440117,440314-440424,
442331-442518,442957-443013,443109-443268,443368-443436,
443580-443699
Length = 368
Score = 27.1 bits (57), Expect = 9.3
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +2
Query: 125 YNPAVHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGA 265
Y P Y P Y+G+P P + L+ +G TPS V A
Sbjct: 21 YKPTSRPHYQPPHYHGQPAAPPAPLQQQHLGP----HGVTPSTVGVA 63
>10_05_0011 -
7822847-7822880,7823653-7823754,7823859-7824106,
7824195-7824240,7824368-7825984,7826673-7826797,
7826915-7829083
Length = 1446
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = -2
Query: 292 LPSPPGSTESSGHGRRS 242
LPS PGST SSG+ RS
Sbjct: 847 LPSTPGSTTSSGYPSRS 863
>04_04_1623 -
34846056-34846223,34846547-34846644,34846738-34846829,
34847096-34847202,34847385-34847490,34848108-34848547
Length = 336
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = -2
Query: 289 PSPPGSTESSGHGRRSLAAATEPRTDFVQLQLTEWSIRFSIVACRIVRPMYSRIILP 119
P+PP ++ GHG S + ++ +D+ ++ TE FS + + S +P
Sbjct: 56 PAPPPASLDGGHGDTSDGSGSDSDSDWEGVESTELDEDFSAASAFVAASAASGTSVP 112
>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
Length = 566
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +2
Query: 170 GKPDTPFSQLKLNEIGSWFGRRS--KTPSAVAGAFSRAWW 283
G P+ S + FGR S KTP ++ F+R WW
Sbjct: 169 GTPNRSSSSCSSSPDTLGFGRSSSTKTPESMKPCFAREWW 208
>04_04_0921 - 29431812-29432786
Length = 324
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 80 RAFLKIWLSVITPRQYNPAVHGPYDP 157
RA K W S + PR P + PYDP
Sbjct: 30 RAVCKSWRSFLRPRSRPPWLMLPYDP 55
>03_02_0581 -
9617039-9617936,9618057-9618502,9618985-9619071,
9619276-9619416,9620220-9620411,9620491-9620652,
9621116-9621199,9621329-9621706
Length = 795
Score = 27.1 bits (57), Expect = 9.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 144 PCTAGLYCLGVITESHIFRKARCTFL 67
PC AG++ G+ E H R A C L
Sbjct: 192 PCAAGIFAHGIEDEFHQVRTAACKSL 217
>01_06_0208 - 27540077-27540992,27541310-27541497
Length = 367
Score = 27.1 bits (57), Expect = 9.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 239 KTPSAVAGAFSRAWWRW 289
+ P AG+F WWRW
Sbjct: 275 RAPPLSAGSFLTGWWRW 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,583,450
Number of Sequences: 37544
Number of extensions: 287435
Number of successful extensions: 877
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -