Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D12
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong s...    29   2.6  
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor...    27   7.8  
At1g63560.1 68414.m07185 receptor-like protein kinase-related co...    27   7.8  

>At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong
           similarity to SPL1-Related2 protein [Arabidopsis
           thaliana] GI:6006427; contains Pfam profile PF03110: SBP
           domain
          Length = 1035

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +1

Query: 160 TLLWKT*YSIQSVEAERNRFVVRSPQQDSVCRGRSFQSSL 279
           T L K  +   SV  ER+    +SP QDS  RG+  +SSL
Sbjct: 349 TNLEKRTFGFSSVGGERSSSSNQSPSQDSDSRGQDTRSSL 388


>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
           (CPK2) identical to calcium-dependent protein kinase
           isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 646

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 274 STESSGHGRRSLAAATEPRTDFVQ 203
           S+ S G+G+ S  AA+EP TD VQ
Sbjct: 34  SSSSHGNGQVSKEAASEPATDQVQ 57


>At1g63560.1 68414.m07185 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function DUF26; weak similarity to receptor-like protein
           kinase 5 (GI:13506747) [Arabidopsis thaliana]
          Length = 273

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = -1

Query: 260 RPRQTESCCGDRTTNRFRSASTD*MEYQVFHSSVQDRKAHVQQDYTALG*SPKAIF 93
           +P+   + C DR ++ F   S+     +   SS++DR +        +G SP  ++
Sbjct: 3   QPQHMATFCDDRLSDNFTQTSSYKANRETLLSSLRDRSSLGTYSNATIGLSPDTVY 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,835,712
Number of Sequences: 28952
Number of extensions: 220086
Number of successful extensions: 581
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)