Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D11
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    25   6.1  
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    24   8.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    24   8.0  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    24   8.0  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 365 GWTNXVXIDIQAFGXLXEGSDI 300
           GWTN + I   AFG   + +D+
Sbjct: 133 GWTNPICIGRHAFGDQYKSTDL 154


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = -2

Query: 398 LLGVQIHGXFRGWTNXVXIDIQAFGXL 318
           ++GV++ G  +GWT+   + ++  G L
Sbjct: 225 VIGVKLTGQLKGWTSPKDVILKVAGIL 251


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 108  YCINPXTWWFIFLKMASVATVTRALL 185
            Y ++   WW+++  + SVA+++   L
Sbjct: 1971 YTVSSVFWWYLYRMLPSVASLSLPFL 1996


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 184 WERMY*TSAKWYPQQPSIHKVL 249
           W+      A WY   P+IH++L
Sbjct: 243 WKEFIQYGATWYTAVPTIHQIL 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,387
Number of Sequences: 5004
Number of extensions: 26946
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)