BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_D11 (411 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6) 30 0.85 SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9 SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9 >SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6) Length = 550 Score = 29.9 bits (64), Expect = 0.85 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%) Frame = +2 Query: 164 YCNSCFAGKECTEQVQSGIRNSQASIK----FYSXASYENLXVKWSAPKKCPTLXLTXQR 331 Y NS F+G C + QS ++ S++++K F A ++ K+S KK + Sbjct: 50 YANSVFSGFSCRKNYQS-LQTSKSNVKLATGFSFTADFQQTSHKYSEAKKKYFIRPCFAD 108 Query: 332 PECLXKXCLSNPEXLHEFEPQANL 403 E + C + E HE Q+ L Sbjct: 109 EE-IDNICRNPQEKCHEAHRQSRL 131 >SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 466 Score = 26.6 bits (56), Expect = 7.9 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = +3 Query: 192 NVLNKCKVVSATAKHP*SFIAQHHTRTSX*SGPLQKNVR 308 N L C+V+ + K P +I HTR S P VR Sbjct: 218 NTLASCQVLCRSCKEPHVWITLPHTRQSTLPQPATTTVR 256 >SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 884 Score = 26.6 bits (56), Expect = 7.9 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -2 Query: 95 TKAPASMTLVNFDTYAGAIKDNYKLLR 15 TK+P + F A ++KD Y+LLR Sbjct: 399 TKSPIDSPMKYFSCGASSVKDRYRLLR 425 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,158,900 Number of Sequences: 59808 Number of extensions: 225160 Number of successful extensions: 494 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 445 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 494 length of database: 16,821,457 effective HSP length: 75 effective length of database: 12,335,857 effective search space used: 752487277 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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