Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D11
         (411 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)                    30   0.85 
SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  
SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_25827| Best HMM Match : Matrix (HMM E-Value=5.6)
          Length = 550

 Score = 29.9 bits (64), Expect = 0.85
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
 Frame = +2

Query: 164 YCNSCFAGKECTEQVQSGIRNSQASIK----FYSXASYENLXVKWSAPKKCPTLXLTXQR 331
           Y NS F+G  C +  QS ++ S++++K    F   A ++    K+S  KK   +      
Sbjct: 50  YANSVFSGFSCRKNYQS-LQTSKSNVKLATGFSFTADFQQTSHKYSEAKKKYFIRPCFAD 108

Query: 332 PECLXKXCLSNPEXLHEFEPQANL 403
            E +   C +  E  HE   Q+ L
Sbjct: 109 EE-IDNICRNPQEKCHEAHRQSRL 131


>SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 192 NVLNKCKVVSATAKHP*SFIAQHHTRTSX*SGPLQKNVR 308
           N L  C+V+  + K P  +I   HTR S    P    VR
Sbjct: 218 NTLASCQVLCRSCKEPHVWITLPHTRQSTLPQPATTTVR 256


>SB_31598| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 95  TKAPASMTLVNFDTYAGAIKDNYKLLR 15
           TK+P    +  F   A ++KD Y+LLR
Sbjct: 399 TKSPIDSPMKYFSCGASSVKDRYRLLR 425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,158,900
Number of Sequences: 59808
Number of extensions: 225160
Number of successful extensions: 494
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)