Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D11
         (411 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF305875-1|AAK55517.1| 1060|Drosophila melanogaster putative thr...    31   0.59 
AE014134-1143|AAF52425.2| 1060|Drosophila melanogaster CG11326-P...    31   0.59 
AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch dep...    28   5.5  
AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA p...    28   5.5  

>AF305875-1|AAK55517.1| 1060|Drosophila melanogaster putative
           thrombospondin protein.
          Length = 1060

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 39  YRTGVCIKVHECHTRRCLCPYH*YCIN 119
           YR   C+ V EC T    CP H  CIN
Sbjct: 470 YRRQTCLDVDECRTGFFRCPEHSTCIN 496


>AE014134-1143|AAF52425.2| 1060|Drosophila melanogaster CG11326-PA,
           isoform A protein.
          Length = 1060

 Score = 31.1 bits (67), Expect = 0.59
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 39  YRTGVCIKVHECHTRRCLCPYH*YCIN 119
           YR   C+ V EC T    CP H  CIN
Sbjct: 470 YRRQTCLDVDECRTGFFRCPEHSTCIN 496


>AJ277789-1|CAB93525.1| 1738|Drosophila melanogaster mismatch depedent
            uracil/thymineDNA glycosylase protein.
          Length = 1738

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 23/84 (27%), Positives = 35/84 (41%)
 Frame = +3

Query: 156  SVATVTRALLGKNVLNKCKVVSATAKHP*SFIAQHHTRTSX*SGPLQKNVRPFX*PPKGL 335
            ++ TV +   G N LN    +SA++ HP   I+  H   S  S   Q     +  PP   
Sbjct: 1157 NIMTVKQLQHGNNNLNTTAGLSASSMHP---ISMEHIAASPQSSH-QMPPSLYNTPPPSH 1212

Query: 336  NVYXNXVCPTPKXSMNLNPKQICG 407
             +Y     P    ++N N  Q+ G
Sbjct: 1213 LLYTASASPMASPALNCNYTQVHG 1236


>AE014135-90|AAF59338.1| 1738|Drosophila melanogaster CG1981-PA
            protein.
          Length = 1738

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 23/84 (27%), Positives = 35/84 (41%)
 Frame = +3

Query: 156  SVATVTRALLGKNVLNKCKVVSATAKHP*SFIAQHHTRTSX*SGPLQKNVRPFX*PPKGL 335
            ++ TV +   G N LN    +SA++ HP   I+  H   S  S   Q     +  PP   
Sbjct: 1157 NIMTVKQLQHGNNNLNTTAGLSASSMHP---ISMEHIAASPQSSH-QMPPSLYNTPPPSH 1212

Query: 336  NVYXNXVCPTPKXSMNLNPKQICG 407
             +Y     P    ++N N  Q+ G
Sbjct: 1213 LLYTASASPMASPALNCNYTQVHG 1236


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,291,103
Number of Sequences: 53049
Number of extensions: 308723
Number of successful extensions: 635
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1209331668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)