Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D11
         (411 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical ...    27   5.3  
U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1...    26   9.2  
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1...    26   9.2  
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1...    26   9.2  
AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR...    26   9.2  
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.      26   9.2  

>AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.2 protein.
          Length = 1061

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 188 KECTEQVQSGIRNS-QASIKFYSXASYENLXVKWSAPKKCPTLXLTXQRPECLXKXCLSN 364
           K+ +E++Q+ IRN+ +A++  +     E++  KW  P+   +L     R EC      S 
Sbjct: 360 KDISEEIQA-IRNTGRATMISFDREHREHMNGKWPNPRTWSSLGTVVLRRECTHHKDHSK 418

Query: 365 P 367
           P
Sbjct: 419 P 419


>U39997-6|AAN60517.1|  942|Caenorhabditis elegans Clear protein 1,
           isoform c protein.
          Length = 942

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 39  YRTGVCIKVHECHTRRCLCP 98
           YR+   +K   C++R+C+CP
Sbjct: 117 YRSKYDVKEPTCYSRKCVCP 136


>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
           isoform a protein.
          Length = 1409

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 39  YRTGVCIKVHECHTRRCLCP 98
           YR+   +K   C++R+C+CP
Sbjct: 117 YRSKYDVKEPTCYSRKCVCP 136


>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
           isoform b protein.
          Length = 1444

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 39  YRTGVCIKVHECHTRRCLCP 98
           YR+   +K   C++R+C+CP
Sbjct: 117 YRSKYDVKEPTCYSRKCVCP 136


>AF047881-1|AAC27552.1|  942|Caenorhabditis elegans truncated CLR-1
           protein.
          Length = 942

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 39  YRTGVCIKVHECHTRRCLCP 98
           YR+   +K   C++R+C+CP
Sbjct: 117 YRSKYDVKEPTCYSRKCVCP 136


>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
          Length = 1409

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 39  YRTGVCIKVHECHTRRCLCP 98
           YR+   +K   C++R+C+CP
Sbjct: 117 YRSKYDVKEPTCYSRKCVCP 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,870,767
Number of Sequences: 27780
Number of extensions: 160644
Number of successful extensions: 363
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)