Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D06
         (493 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   9e-16
SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                 71   7e-13
SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                55   4e-08
SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   8e-04
SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16)             33   0.17 
SB_46434| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.39 
SB_38029| Best HMM Match : PqqD (HMM E-Value=1.1)                      28   3.6  
SB_52450| Best HMM Match : DUF1222 (HMM E-Value=0)                     28   3.6  
SB_56498| Best HMM Match : Tropomyosin (HMM E-Value=0.13)              27   6.4  
SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)                    27   6.4  
SB_34225| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)                 27   6.4  
SB_6077| Best HMM Match : EGF (HMM E-Value=0)                          27   8.4  

>SB_34622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 80.2 bits (189), Expect = 9e-16
 Identities = 42/109 (38%), Positives = 66/109 (60%), Gaps = 13/109 (11%)
 Frame = +3

Query: 201 FXTEQEIGEAVKMKVEEGVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDIY 380
           +  E+E+G+A++ ++   VV+R+D+FIT+KLWNT+H   +V     DSLK LGLDY+D+Y
Sbjct: 48  YRNEKEVGDALR-ELLGSVVERKDLFITSKLWNTKHNPKDVRSNCVDSLKDLGLDYLDLY 106

Query: 381 LMHWPIGL-------------NADYSHSDVDFMETWRGLEDAQRMGIVK 488
           L+HWP+               N  Y++ D    +TW+ +E     G+VK
Sbjct: 107 LIHWPLSFRDGDEFFPKDEQGNVLYAYHDP--CDTWKAMEKLVDEGLVK 153



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 23/56 (41%), Positives = 31/56 (55%)
 Frame = +2

Query: 41  LKMNNGRDMPAIGLGTYLGFDQNGVVKSKDKQLRDVVMRAIDVGYRHFXTASVFXN 208
           +K+NNG +MP +GLGT+         KSK  Q+ + V  AI  GYRH   A  + N
Sbjct: 4   VKLNNGLEMPVLGLGTW---------KSKPGQVENAVKFAIKEGYRHIDCAYAYRN 50


>SB_7528| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 407

 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 31/66 (46%), Positives = 44/66 (66%)
 Frame = +3

Query: 201 FXTEQEIGEAVKMKVEEGVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDIY 380
           +  E EIGEA+   + EG VKRE++F+T+KLW   H   +V  A   +LK L LDY+D+Y
Sbjct: 88  YGNEGEIGEALSEVLTEGKVKREELFVTSKLWCDSHHPDDVLPACQATLKNLQLDYLDLY 147

Query: 381 LMHWPI 398
           L+H P+
Sbjct: 148 LIHIPV 153



 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 119 KSKDKQLRDVVMRAIDVGYRHFXTASVFXN 208
           +S  +++ + V  AI++GYRH   A ++ N
Sbjct: 61  QSSKEEVGNAVRLAIELGYRHIDCAEIYGN 90


>SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 333

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 25/66 (37%), Positives = 41/66 (62%)
 Frame = +3

Query: 201 FXTEQEIGEAVKMKVEEGVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDIY 380
           +  EQ +GEAV+       + R +I++ TK++ T+H   E   A   SL +LGL Y+D+Y
Sbjct: 109 YHNEQSVGEAVRCSN----IPRCEIYVVTKVYFTEHGYKETMDAFYKSLTRLGLGYVDLY 164

Query: 381 LMHWPI 398
           L+H+P+
Sbjct: 165 LIHFPV 170



 Score = 28.3 bits (60), Expect = 3.6
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 47  MNNGRDMPAIGLGTYLGFDQNGVVKSKDKQLRDVVMRAIDVGYRHFXTASVFXN 208
           MN+GR +P +GLG +            D   +  V+ A++ GYR   TAS + N
Sbjct: 70  MNDGRKIPLLGLGAH------------DIHSKQAVLWALESGYRLIDTASRYHN 111


>SB_56309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 23/65 (35%), Positives = 42/65 (64%)
 Frame = +3

Query: 201 FXTEQEIGEAVKMKVEEGVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDIY 380
           +  E+E+G AV+    +  +KREDI++TTKL  ++   +   +   +S+KKL + Y+D++
Sbjct: 67  YQNEKEVGSAVR----KSGLKREDIYVTTKLKPSEEGHSNALKYAKESIKKLDIGYVDLF 122

Query: 381 LMHWP 395
           L+H P
Sbjct: 123 LIHTP 127


>SB_8916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 40.3 bits (90), Expect = 8e-04
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
 Frame = +3

Query: 231 VKMKVEEGVVKREDIFITTKLWNTQHRRTEVAQAINDSLKKLGLDYIDIYLMHW----PI 398
           V   + +  + R+DIFI TKL           +++  SL+ L  DYID++L+H       
Sbjct: 379 VAKAIADSGIPRKDIFIITKLHPRYLGYEPTLKSVEMSLRALSTDYIDLFLIHSKTCDDF 438

Query: 399 GLNADYSHSDVDFMETWRGLEDAQRMGIVK 488
            L          + E+W+ +E+  R G ++
Sbjct: 439 LLTCAEGEPRGTWKESWKAMEELHRQGKIR 468


>SB_55921| Best HMM Match : Aldo_ket_red (HMM E-Value=0.16)
          Length = 195

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 11/17 (64%), Positives = 16/17 (94%)
 Frame = +3

Query: 342 SLKKLGLDYIDIYLMHW 392
           SL++LG+D ID+YL+HW
Sbjct: 51  SLERLGIDRIDLYLLHW 67


>SB_46434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 873

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = -3

Query: 248 LYLHLHGFSNFLFSXKKRRRYXNDGIRHLWRALQHHGAACPWTSLRRSDQTQGTCPGRWR 69
           L LH  G   ++F+ +  R     GIR + +    HG A PW    R ++     P +W+
Sbjct: 661 LVLH-EGLVIWIFTAESARNPRRTGIRQMEKIFCLHGGAIPW----RRNKAINQRPQKWQ 715

Query: 68  AC 63
            C
Sbjct: 716 RC 717


>SB_38029| Best HMM Match : PqqD (HMM E-Value=1.1)
          Length = 215

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -2

Query: 456 ILARSP*SLRPNDYNRHLIQ-W-ASASNKYLYNP 361
           +L R P  +R N+YN HL+Q W A+   +Y+ +P
Sbjct: 69  LLRRLPSEIRINNYNTHLLQAWRANMDMQYVLDP 102


>SB_52450| Best HMM Match : DUF1222 (HMM E-Value=0)
          Length = 640

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 453 LARSP*SLRPNDYNRHLIQWASASNKYLYNPDLVSSVNRL 334
           +AR P  + P  Y    + W +A   Y YNP L+    +L
Sbjct: 513 VARRPCLISPYHYRLDWLMWFAAFQNYQYNPWLIHLAAKL 552


>SB_56498| Best HMM Match : Tropomyosin (HMM E-Value=0.13)
          Length = 437

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +3

Query: 165 MSDTVISIPPPFFXTEQEIGEAVKMKVEEGVVKREDIFITTKLWNTQHRRTEVAQAINDS 344
           M   VI++        Q + ++ +  VE     RE +    +LW  + RRTE  +A+   
Sbjct: 306 MQGRVINVMHRLNRARQRMRDSGRRAVELQEELRELLSRAGELWGRKERRTEAKKALKGL 365

Query: 345 LKKLGL 362
           +++ G+
Sbjct: 366 VRRAGV 371


>SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)
          Length = 736

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
 Frame = -1

Query: 313 LRCWVFHSLVVIKISS-LLTTPSSTFIFTASPISCSVXKNGGGXEMTVSDIYGAHYNITE 137
           L  W +H +  I ++  L      T     S I   + +N G  +  + D + A  +  +
Sbjct: 230 LSAW-YHKIPGIDVTGELCAVKMCTGELDLSTILAVIFQNLGEGQSDIQDFFMADLSFWQ 288

Query: 136 LLVLGLH---YAVLIKPKVRAQADGGHVSAVVHF*XRALPSLTPA 11
            LV       Y ++ +P V +  +G  V  V       +PS TPA
Sbjct: 289 FLVYCCDLSAYIIVDEPSVESSGEGAIVPEVGDGSVAVVPSSTPA 333


>SB_34225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 607

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 336 NDSLKKLGLDYIDIYLMHWPIGLNADYS 419
           +D +K   +   D Y+ HW +GL  DY+
Sbjct: 173 DDYIKHWEMGLTDDYIKHWEMGLTDDYT 200



 Score = 27.5 bits (58), Expect = 6.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 336 NDSLKKLGLDYIDIYLMHWPIGLNADYS 419
           +D +K   +   D Y+ HW +GL  DY+
Sbjct: 233 DDYIKHWEMGLTDDYIKHWEMGLTDDYT 260


>SB_26637| Best HMM Match : zf-CCHC (HMM E-Value=0.018)
          Length = 406

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = -3

Query: 176 GIRHLWRALQHHGAACPWTSLRRSDQTQGTCPGRWRAC 63
           G+RH    L+     C W   RR       CP   ++C
Sbjct: 125 GLRHSQMKLRREPGTCFWCGDRRGPHPWKECPANGKSC 162


>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1165

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 363 DYIDIYLMHWPIGLNADYSHSDVD 434
           D +  YL HWP G       +D+D
Sbjct: 764 DLVTGYLCHWPAGFKGSNCETDID 787


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,348,510
Number of Sequences: 59808
Number of extensions: 298575
Number of successful extensions: 1062
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)