Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D06
         (493 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.33 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.33 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 289 LVVIKISSLLTTPSSTFIFTASPISCSVXKNGGGXEMTVSDIYGA 155
           L +I ++ +L    +TF+  A+P + +      G  ++ S +YGA
Sbjct: 553 LTIILLAGVLVCYLNTFLLLATPTTVTCILQRFGVGVSFSAVYGA 597


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 289 LVVIKISSLLTTPSSTFIFTASPISCSVXKNGGGXEMTVSDIYGA 155
           L +I ++ +L    +TF+  A+P + +      G  ++ S +YGA
Sbjct: 643 LTIILLAGVLVCYLNTFLLLATPTTVTCILQRFGVGVSFSAVYGA 687


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 182 NDGIRHLWRALQHHGAACPWTSLRRSDQTQGTCPG 78
           N G+ H  +  QH+GAA       +S Q Q    G
Sbjct: 15  NGGVEHPHQHQQHYGAAVQVPQQTQSVQQQSQQAG 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,470
Number of Sequences: 438
Number of extensions: 3134
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)