Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D04
         (655 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    27   0.18 
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    27   0.18 
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    27   0.18 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   5.1  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
 Frame = -1

Query: 334 KRRSHQQLSGTKHQSFCKINNGFCRSNSRVNFIVNIFLILQKWRC--VIYISTPIKSKFC 161
           +R SH+ L G    +F +    F + +  +  +++I  ++ KWR   V+ +   I S   
Sbjct: 103 RRFSHKALQGAIMITFYRDEPRFSQPHQILTLLMDIDSLITKWRYNHVLMVQRMIGSSQL 162

Query: 160 FTLLTAENLHE**EANFFSXYSVSLDMFTLEWFS*IFSKIYLPDVN 23
            T     + ++   +     Y V +D+F L  F  +  + Y+P ++
Sbjct: 163 GT--GGSSGYQYLRSTLSDRYKVFVDLFNLSTF--LIPRSYIPPLS 204


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
 Frame = -1

Query: 334 KRRSHQQLSGTKHQSFCKINNGFCRSNSRVNFIVNIFLILQKWRC--VIYISTPIKSKFC 161
           +R SH+ L G    +F +    F + +  +  +++I  ++ KWR   V+ +   I S   
Sbjct: 263 RRFSHKALQGAIMITFYRDEPRFSQPHQILTLLMDIDSLITKWRYNHVLMVQRMIGSSQL 322

Query: 160 FTLLTAENLHE**EANFFSXYSVSLDMFTLEWFS*IFSKIYLPDVN 23
            T     + ++   +     Y V +D+F L  F  +  + Y+P ++
Sbjct: 323 GT--GGSSGYQYLRSTLSDRYKVFVDLFNLSTF--LIPRSYIPPLS 364


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
 Frame = -1

Query: 334 KRRSHQQLSGTKHQSFCKINNGFCRSNSRVNFIVNIFLILQKWRC--VIYISTPIKSKFC 161
           +R SH+ L G    +F +    F + +  +  +++I  ++ KWR   V+ +   I S   
Sbjct: 263 RRFSHKALQGAIMITFYRDEPRFSQPHQILTLLMDIDSLITKWRYNHVLMVQRMIGSSQL 322

Query: 160 FTLLTAENLHE**EANFFSXYSVSLDMFTLEWFS*IFSKIYLPDVN 23
            T     + ++   +     Y V +D+F L  F  +  + Y+P ++
Sbjct: 323 GT--GGSSGYQYLRSTLSDRYKVFVDLFNLSTF--LIPRSYIPPLS 364


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 286 CKINNGFCRSNSRVNFIVNIFL 221
           C  N+GF     RVN +  +F+
Sbjct: 29  CSDNDGFLPGQGRVNQLGGVFI 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,480
Number of Sequences: 336
Number of extensions: 3143
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)