Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D04
         (655 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    37   0.002
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    28   1.4  
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar...    27   3.1  

>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +1

Query: 358 VXDLENEETSFGPDMCHQVFGXNXNIFGYTDLHIKLYYSAGSLQTYLGIDYTDKIEPSKS 537
           V +   ++  + P   + +FG    I+GY DL++ + Y    +   L I Y++++ P   
Sbjct: 20  VNEKHEKDCQYHPSNTYAIFGDAEVIYGYKDLNVTITYECPLMVPKLEISYSERLAPDSG 79

Query: 538 XRMKADDVXGAL 573
             ++  D+ G L
Sbjct: 80  --VEPTDIEGTL 89


>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -2

Query: 99  IPFPWICLL*NGF 61
           IPFPW+CL+ NGF
Sbjct: 176 IPFPWLCLI-NGF 187


>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 301 KHQSFCKINNGFCRSNSRV--NFIVNIFLILQKWRCVIYISTPIKSKFCFTLLTAENL 134
           K  S C++++ +  S  +   +F    F++L+   C++     IK+  C T    ENL
Sbjct: 59  KFHSHCQLSSSYTNSGQKSFKSFNSLRFIVLKSKTCLLRYKLLIKTFCCITYSKIENL 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,045
Number of Sequences: 5004
Number of extensions: 51583
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)