Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D04
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4)                    79   3e-15
SB_10345| Best HMM Match : MAM (HMM E-Value=1.4013e-45)                29   2.5  
SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15)                   29   4.4  

>SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4)
          Length = 252

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 37/100 (37%), Positives = 56/100 (56%)
 Frame = +1

Query: 355 SVXDLENEETSFGPDMCHQVFGXNXNIFGYTDLHIKLYYSAGSLQTYLGIDYTDKIEPSK 534
           S  D+ ++   F P   HQ FG +  IFGY  L ++LYY AG+L TYLG+ Y   I    
Sbjct: 40  SEKDVFDKGRQFHPAFSHQFFGDSETIFGYCGLEVQLYYHAGTLLTYLGLTYESNINGKV 99

Query: 535 SXRMKADDVXGALTKVIAPGYITNLDHFVSQLKKDESFTP 654
           +  ++AD V   + +    G++TN D F+++L +  SF P
Sbjct: 100 ADGIEADPVVQIIGEQFPGGFLTNKDEFIAKLPEQSSFVP 139


>SB_10345| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
          Length = 474

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 298 HQSFCKINNGFCRSNSRVN 242
           HQ FC  NNGFC   + +N
Sbjct: 347 HQGFCDFNNGFCLWENDIN 365


>SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15)
          Length = 615

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +1

Query: 451 LHIKLYYSAGSLQTYLGIDYTDK----IEPSKSXRMKADDVXGALTKVIAPGYITNLDHF 618
           L +K  + +GS ++Y+     ++    ++PS S    A    GA+ K +   +++ +D  
Sbjct: 193 LQVKALFDSGSSESYIHPSLVEQASLTVQPSSSTVSMATSSTGAIKKTVEEAFVSAIDES 252

Query: 619 V 621
           +
Sbjct: 253 I 253


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,481,691
Number of Sequences: 59808
Number of extensions: 349675
Number of successful extensions: 496
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)