BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_D04 (655 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4) 79 3e-15 SB_10345| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 29 2.5 SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15) 29 4.4 >SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4) Length = 252 Score = 79.0 bits (186), Expect = 3e-15 Identities = 37/100 (37%), Positives = 56/100 (56%) Frame = +1 Query: 355 SVXDLENEETSFGPDMCHQVFGXNXNIFGYTDLHIKLYYSAGSLQTYLGIDYTDKIEPSK 534 S D+ ++ F P HQ FG + IFGY L ++LYY AG+L TYLG+ Y I Sbjct: 40 SEKDVFDKGRQFHPAFSHQFFGDSETIFGYCGLEVQLYYHAGTLLTYLGLTYESNINGKV 99 Query: 535 SXRMKADDVXGALTKVIAPGYITNLDHFVSQLKKDESFTP 654 + ++AD V + + G++TN D F+++L + SF P Sbjct: 100 ADGIEADPVVQIIGEQFPGGFLTNKDEFIAKLPEQSSFVP 139 >SB_10345| Best HMM Match : MAM (HMM E-Value=1.4013e-45) Length = 474 Score = 29.5 bits (63), Expect = 2.5 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -1 Query: 298 HQSFCKINNGFCRSNSRVN 242 HQ FC NNGFC + +N Sbjct: 347 HQGFCDFNNGFCLWENDIN 365 >SB_53795| Best HMM Match : rve (HMM E-Value=5.9e-15) Length = 615 Score = 28.7 bits (61), Expect = 4.4 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 4/61 (6%) Frame = +1 Query: 451 LHIKLYYSAGSLQTYLGIDYTDK----IEPSKSXRMKADDVXGALTKVIAPGYITNLDHF 618 L +K + +GS ++Y+ ++ ++PS S A GA+ K + +++ +D Sbjct: 193 LQVKALFDSGSSESYIHPSLVEQASLTVQPSSSTVSMATSSTGAIKKTVEEAFVSAIDES 252 Query: 619 V 621 + Sbjct: 253 I 253 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,481,691 Number of Sequences: 59808 Number of extensions: 349675 Number of successful extensions: 496 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 464 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 496 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1669334250 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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