Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P03_F_D03
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1 |Schizosacch... 126 3e-30
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 54 2e-08
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 32 0.083
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23... 26 0.11
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 30 0.33
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 28 1.3
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc... 27 3.1
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom... 27 3.1
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 27 3.1
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 27 3.1
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 26 5.4
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 25 7.2
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 25 9.5
>SPBC3B8.01c |arh1||NADPH-adrenodoxin reductase Arh1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 469
Score = 126 bits (304), Expect = 3e-30
Identities = 61/121 (50%), Positives = 82/121 (67%), Gaps = 1/121 (0%)
Frame = +2
Query: 290 RTLNRFYSANNYTKIPRVCIVGAGPAGFYAAMHLTKNI-QCKIDLIEKLPVPFGLIRYGV 466
R + R YS T P V I+G+GPA FY A L +N KID+ E PVPFGL+RYGV
Sbjct: 4 RFIKRTYSTQ--TSSPVVGIIGSGPAAFYTAHRLLRNDPNVKIDMFESRPVPFGLVRYGV 61
Query: 467 APDHPEVKNVINQFTKVAQRPEVNFYGNVTLGKDITLNQLRQHYDAVLLTYGAEKDKTLG 646
APDHPEVK+V ++F+++A+ + F GNV +G D++L L ++YD ++L YGA DK LG
Sbjct: 62 APDHPEVKHVEHKFSEIAESTQFRFLGNVNVGTDVSLRDLTKNYDCLVLAYGAAGDKRLG 121
Query: 647 I 649
I
Sbjct: 122 I 122
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 53.6 bits (123), Expect = 2e-08
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Frame = +2
Query: 338 RVCIVGAGPAGFYAAMHLTKNIQCKIDLIEKLPVPFGLIRYGVAPDHPEVKNVINQFTKV 517
RV I+G+GPAG AA L + + + E+ P GL++YG+ P+ K V+ + ++
Sbjct: 1757 RVAIIGSGPAGLAAADQLNR-AGHHVVIYERADRPGGLLQYGI-PNMKLDKKVVERRIQL 1814
Query: 518 AQRPEVNFYGNVTLGK--DITLNQLRQHYDAVLLTYGAEKDKTLGI 649
+ NV +GK D++L++L + YDAV+L G+ + L I
Sbjct: 1815 MIDEGIEVLTNVEVGKNGDVSLDELHKVYDAVVLASGSTVPRDLPI 1860
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 31.9 bits (69), Expect = 0.083
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Frame = +2
Query: 242 FHESVKI*NKMTFGNLRTLNRFYSANNYTKIPRVCIVGAGPAGFYAAMHLTK-----NIQ 406
FH S N++T NLR L+ + + VCIVGAGPAG AA+ + + N
Sbjct: 64 FHSSSVRLNELT-DNLRKLD---TIEREVEDVDVCIVGAGPAGLSAAIRIKQQAAKANRD 119
Query: 407 CKIDLIEKLPVP 442
++ ++EK P
Sbjct: 120 IRVVVLEKAAEP 131
>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 26.2 bits (55), Expect(2) = 0.11
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 497 SHFLLQGDLELHHILLIRRVPEVFLLNQSC 408
+ F L G++ L + + R V+LLN+SC
Sbjct: 247 AQFRLLGNISLVDVKYVTRSSSVYLLNKSC 276
Score = 23.8 bits (49), Expect(2) = 0.11
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 320 YLLNKICSKFLNFRKS 273
YLLNK C+ FL+ KS
Sbjct: 270 YLLNKSCAHFLSVIKS 285
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 29.9 bits (64), Expect = 0.33
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 341 VCIVGAGPAGFYAAMHLTKNIQCKIDLIEKLPVP 442
V IVGAG G AA+ LTK I ++++ P P
Sbjct: 7 VIIVGAGVFGLSAALELTKRGGYTIKILDRAPPP 40
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +2
Query: 353 GAGPAGFYAAMHLTKNIQCKIDLIEKLPVPFGLIRYGVAPDHPEVKNVINQFTKVAQRPE 532
GAG + L +N+Q + ++PV L R G DHP VKN+I +
Sbjct: 349 GAGSSLLENPGRLLRNLQGMDAVSGQIPVTVKL-RMGNKDDHPVVKNLIGRIFNETNTSA 407
Query: 533 VNFYG 547
+G
Sbjct: 408 ATLHG 412
>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1679
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 458 YGVAPDHPEVKNVINQFTKVAQRPEVNFYGNVTLGKDITLNQLR 589
+ A H EV + ++FT+ + P++ +V + DI L++ R
Sbjct: 201 FASADSHSEVARLADEFTRDSGLPDLENLSHVNVLLDIALDKFR 244
>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
Trr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +2
Query: 338 RVCIVGAGPAGFYAAMHLTK 397
+V I+G+GPAG AA++L +
Sbjct: 5 KVVIIGSGPAGHTAAIYLAR 24
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 325 HKNSSSMYCWSWSCRLLCRH 384
HKN SS W+W + L +H
Sbjct: 418 HKNDSSARTWNWKSKTLGQH 437
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +2
Query: 335 PRVCIVGAGPAGFYAAMHL-TKNIQCKIDLIEKL-PVPFGLIRYGVAPDHPEV-KNVINQ 505
P VCI+G G AA +L KN + KI + + VP+ D P++ K++++
Sbjct: 158 PHVCIIGGGKGASVAAEYLREKNFKGKITIFTREDEVPY---------DRPKLSKSLLHD 208
Query: 506 FTKVAQRPEVNFYGNVTL 559
+K+A R + +Y ++ +
Sbjct: 209 ISKLALRSK-EYYDDLDI 225
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 332 IPRVCIVGAGPAGFYAAMH-LTKNIQCKIDLIEKLPVPFGLIRY 460
I ++ I+GAGP+G A L + ++ L E+ P G+ Y
Sbjct: 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY 49
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.4 bits (53), Expect = 7.2
Identities = 6/24 (25%), Positives = 15/24 (62%)
Frame = -3
Query: 529 WSLSHFGKLIYHIFYFRVIWSYTI 458
W + +++ + FY V+W++T+
Sbjct: 1061 WDYNRVAEMVNNFFYKSVVWTFTL 1084
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 25.0 bits (52), Expect = 9.5
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +2
Query: 341 VCIVGAGPAGFYAAM 385
+C++G GP G+ AA+
Sbjct: 48 LCVIGGGPGGYVAAI 62
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,428
Number of Sequences: 5004
Number of extensions: 53695
Number of successful extensions: 137
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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