BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P03_F_D03 (651 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3 SB_46394| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6 SB_13309| Best HMM Match : EGF (HMM E-Value=0) 28 7.6 SB_14454| Best HMM Match : Keratin_B2 (HMM E-Value=0.8) 28 7.6 SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0) 28 7.6 >SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 477 Score = 28.7 bits (61), Expect = 4.3 Identities = 11/31 (35%), Positives = 20/31 (64%) Frame = +2 Query: 335 PRVCIVGAGPAGFYAAMHLTKNIQCKIDLIE 427 PRV ++G G AG AA++L + + + ++E Sbjct: 5 PRVVVIGGGIAGLSAALNLQNSKEVDVTILE 35 >SB_46394| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 62 Score = 27.9 bits (59), Expect = 7.6 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +2 Query: 338 RVCIVGAGPAGFYAAMHLTK 397 +V I+G+GPAG AA+ L K Sbjct: 43 KVAIIGSGPAGLSAAVQLNK 62 >SB_13309| Best HMM Match : EGF (HMM E-Value=0) Length = 718 Score = 27.9 bits (59), Expect = 7.6 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Frame = +1 Query: 442 LRINKIWCSSRSP*SKKCDKSIYQSGSTTRG-QFLWKCYSRKRYHFKSTKTA 594 LR IW ++ KC K+ G G QF +CYS KS KTA Sbjct: 640 LRPEIIWTDMKTSVVDKCAKAAKAEGFKYFGIQFHGECYSGPDAEVKSIKTA 691 >SB_14454| Best HMM Match : Keratin_B2 (HMM E-Value=0.8) Length = 593 Score = 27.9 bits (59), Expect = 7.6 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = +2 Query: 248 ESVKI*NKMTFGNLRTLNRFY-SANNYTKIPRVCIVGAGPAGFY 376 ES+ I N TF N+ + + Y SA +Y + R + G G A FY Sbjct: 342 ESLSIGNDFTFSNISSFSHSYSSAKSYELLHR--MAGNGLAAFY 383 >SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0) Length = 1256 Score = 27.9 bits (59), Expect = 7.6 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Frame = +2 Query: 446 GLIRYGVAPDHPEVKNVINQFTKV-----AQRPEVNFYGNVTLGKDITLNQLRQHYDAVL 610 G ++YG K ++N F KV P NFY + K ++ Q +H D + Sbjct: 878 GEVQYGGRVTDDFDKRLLNTFAKVWFSEGMFHPSFNFYKGYVIPKGTSVQQFLEHIDGLK 937 Query: 611 LTYGAE 628 L E Sbjct: 938 LVDSPE 943 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,341,579 Number of Sequences: 59808 Number of extensions: 353349 Number of successful extensions: 650 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 599 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 649 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1657237625 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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