Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P03_F_D03
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   4.3  
SB_46394| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_13309| Best HMM Match : EGF (HMM E-Value=0)                         28   7.6  
SB_14454| Best HMM Match : Keratin_B2 (HMM E-Value=0.8)                28   7.6  
SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)                 28   7.6  

>SB_612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 335 PRVCIVGAGPAGFYAAMHLTKNIQCKIDLIE 427
           PRV ++G G AG  AA++L  + +  + ++E
Sbjct: 5   PRVVVIGGGIAGLSAALNLQNSKEVDVTILE 35


>SB_46394| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 338 RVCIVGAGPAGFYAAMHLTK 397
           +V I+G+GPAG  AA+ L K
Sbjct: 43  KVAIIGSGPAGLSAAVQLNK 62


>SB_13309| Best HMM Match : EGF (HMM E-Value=0)
          Length = 718

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 442 LRINKIWCSSRSP*SKKCDKSIYQSGSTTRG-QFLWKCYSRKRYHFKSTKTA 594
           LR   IW   ++    KC K+    G    G QF  +CYS      KS KTA
Sbjct: 640 LRPEIIWTDMKTSVVDKCAKAAKAEGFKYFGIQFHGECYSGPDAEVKSIKTA 691


>SB_14454| Best HMM Match : Keratin_B2 (HMM E-Value=0.8)
          Length = 593

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 248 ESVKI*NKMTFGNLRTLNRFY-SANNYTKIPRVCIVGAGPAGFY 376
           ES+ I N  TF N+ + +  Y SA +Y  + R  + G G A FY
Sbjct: 342 ESLSIGNDFTFSNISSFSHSYSSAKSYELLHR--MAGNGLAAFY 383


>SB_2066| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 1256

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
 Frame = +2

Query: 446  GLIRYGVAPDHPEVKNVINQFTKV-----AQRPEVNFYGNVTLGKDITLNQLRQHYDAVL 610
            G ++YG        K ++N F KV        P  NFY    + K  ++ Q  +H D + 
Sbjct: 878  GEVQYGGRVTDDFDKRLLNTFAKVWFSEGMFHPSFNFYKGYVIPKGTSVQQFLEHIDGLK 937

Query: 611  LTYGAE 628
            L    E
Sbjct: 938  LVDSPE 943


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,341,579
Number of Sequences: 59808
Number of extensions: 353349
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)